Pgib019868.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Psococerastis gibbosa
Gene Symbol
-
Assembly
GCA_963971405.1
Location
OZ020490.1:30249647-30256019[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 4.9e-05 0.0033 18.3 0.9 1 23 113 135 113 135 0.94
2 20 7.3e-06 0.00049 20.9 0.2 1 23 141 163 141 163 0.97
3 20 2.3e-07 1.5e-05 25.7 0.9 1 23 169 191 169 191 0.98
4 20 0.00031 0.02 15.8 3.5 1 23 197 219 197 219 0.99
5 20 4.7e-07 3.1e-05 24.7 1.2 1 23 225 247 225 247 0.99
6 20 1.2e-05 0.00081 20.2 0.6 1 23 253 275 253 275 0.98
7 20 3.4e-05 0.0023 18.8 1.2 1 23 281 303 281 303 0.98
8 20 1.3e-06 8.7e-05 23.2 0.7 1 23 312 334 312 334 0.98
9 20 4.5e-05 0.003 18.4 2.7 1 23 340 362 340 362 0.98
10 20 3e-08 2e-06 28.4 2.9 1 23 368 390 368 390 0.99
11 20 0.03 2 9.5 0.5 5 23 408 426 406 426 0.97
12 20 0.00018 0.012 16.5 0.9 1 23 432 454 432 454 0.99
13 20 1.1e-06 7.3e-05 23.5 0.6 1 23 460 482 460 482 0.98
14 20 7.1e-07 4.7e-05 24.1 1.7 1 23 488 510 488 510 0.98
15 20 1.2e-06 7.7e-05 23.4 1.9 1 23 529 551 529 551 0.98
16 20 6.6e-05 0.0044 17.9 0.2 1 23 557 579 557 579 0.99
17 20 0.0013 0.088 13.8 2.6 2 23 586 607 585 607 0.97
18 20 3.9e-05 0.0026 18.6 2.8 1 23 613 635 613 635 0.98
19 20 7.4e-06 0.00049 20.9 2.9 1 23 641 663 641 663 0.98
20 20 1.8e-06 0.00012 22.9 2.4 1 23 669 691 669 691 0.99

Sequence Information

Coding Sequence
ATGGATCTGAGTGATGACATCGTCGTGCATGTGAAGGACGAAGTTGTCAGTTTGTCAGGCAGCCTGGAAGAATTAAGTCAATTTGCTGTTACAAACGATCTGGGTGGAGATAACATCGCAGTTAAAGAAGAAGCAATCAGTTTGTGTGGCAGCTTAGAAGATTTAAGTGAAGTTCCTCCTGATGACGATCACACCGACAATTATGGGGAAATTATGGAAGCCGATGTGTCACCAGATGATCAGGCTAGTGACCCGAATTTCGATTGCAATAAGAAGGGAACCTCGAAAAAGAGAACGTACAAGAGACGTGTTCCAACGAATACGCAAGATAAACCATTCCGGTGCAAGCTTTGTGACAAGAAATTCGTCACGGACATAAATCTACAAAATCATATGCCAACACACACAGGAAATTTTCCATATGAATGTAACGTATGCAAGAAACCGTTCGCGTTAAAAGGTAGCCTCCAAAAACATATGGTAATACACACAGGGGAAAAACTGTTTGAGTGCCCCGTATGTCACAAAACTTATGCCAGAAATGGTAACCTTACGCAACATATGGTAACTCACACGGGCGAGAAACGGTTTCAGTGTACTGTATGTCATAAGAAATTCGCACTTGGTTTCTATCTGAAGTCACATATGATGACGCACACGGGGGAGAAACCTTTCCAATGTACCGTATGTGAAAAGACATTTCCAAGTAAACGGAATTTGAATTACCATATGGCAACCCATACAGGAGGTGGGCAGTTTCAGTGTACTGTATGTGAAAAGGCATTCCCCACTCGCACTAGACTTAAAATACATATGGTAACTCACATGGGCGATAAACCCCATCAGTGCACCCTATGCGACATGGCATATACCTCCAGCGATAGCCTTAAGTCCCATGTGTTGACACATACAGGGGAAAAAGCCCCAAAACCGTTCACGTGTACCGTATGTGATAGGGCATTTTCAAAAAGTGGTAGTTTAAAACAGCATATGTTATTACACTCGGGAGAGAAGCCTTTCAAATGTTGTATATGTGAAATGGCATTTTCCCAAAGAAGTGGCTTGAGCCAGCATATGTTTACTCATGCGGAGGTGAAACCATTCCAGTGTAACATATGTGAGAGGACGTTTTCACAGAGTAGCAATTTTAAGAAACATATGTTAACACATGAAGCCACAACTATTGTGATTCTGGCGACAGATTCGGAGGATAAACAGTTCCATTGTGATAAGGCGTTTGCTATAAAAAGTGACGTTGTTAGACACAAGTTAACACATTCTGGGAATAAACCTTATCAGTGTACCGCGTGTGAGATGGCATTTTCGTTAAACCACGCCCTCAAGTCGCATATGTTAACGCATCTGGACGAAAAACCGTTCATATGTGAAATATGTTCTAAACCGTTCACTAGACAACGTGACGTCACGAGACACATGTTGACGCATTCGGGGAAAAGAGCGTTTATGTGTAGCGTATGTAAGAAAACATTTGCGCATAGTAGCAGCCTTACGGTGCATATGCTGGTACATACATGGAAAGCTGATGGTGTTAAAGATGTGGCAGTACATACCGAGGGGAAACATTTTCAGTGTGAGTTATGCGAGCGGGCGTTTTATCGTCGCAGTGACCTCACTAAACATATGTTTACCCACTCAGGGAGCAAACCATACCAGTGTACCGTATGCGAAGCAACATTTTACCAAAATAACGCTCTTAAGGGACATATTTTAACGCATAAGAAGCAAAAGAAATTGCAGTGTGACATATGTTTGAAGACGTTTTTGAGAAGGAGTGACGTTACCAAACATATGCACACTCATACAGGGAGTACGCCATACCATTGTACCATATGTGATGCGTCTTTCTGTCAAAATAACGCGCTTAAAGGGCATATGTTGACGCATACGAAGCAGAATGAGTTCCAGTGTGATACGTGTGAGAAGATATTCAGTAGGAGATGTGACCTCACTAGACATATTGTAACCCACACAGGGCAGAAGCCCTATCAGTGTACCGTGTGTGAGAAAGCATACACCCAAAGTTGCAACCTGAAGGCGCATATGTTAAAGCATAAAGAGACTGTGATGGGCCACTTCGCTGATAATGGGCTCATAAGTGACGAGTCTGTAGATTCTACTGGAGAAACCATTCTAGCGGATATGTAA
Protein Sequence
MDLSDDIVVHVKDEVVSLSGSLEELSQFAVTNDLGGDNIAVKEEAISLCGSLEDLSEVPPDDDHTDNYGEIMEADVSPDDQASDPNFDCNKKGTSKKRTYKRRVPTNTQDKPFRCKLCDKKFVTDINLQNHMPTHTGNFPYECNVCKKPFALKGSLQKHMVIHTGEKLFECPVCHKTYARNGNLTQHMVTHTGEKRFQCTVCHKKFALGFYLKSHMMTHTGEKPFQCTVCEKTFPSKRNLNYHMATHTGGGQFQCTVCEKAFPTRTRLKIHMVTHMGDKPHQCTLCDMAYTSSDSLKSHVLTHTGEKAPKPFTCTVCDRAFSKSGSLKQHMLLHSGEKPFKCCICEMAFSQRSGLSQHMFTHAEVKPFQCNICERTFSQSSNFKKHMLTHEATTIVILATDSEDKQFHCDKAFAIKSDVVRHKLTHSGNKPYQCTACEMAFSLNHALKSHMLTHLDEKPFICEICSKPFTRQRDVTRHMLTHSGKRAFMCSVCKKTFAHSSSLTVHMLVHTWKADGVKDVAVHTEGKHFQCELCERAFYRRSDLTKHMFTHSGSKPYQCTVCEATFYQNNALKGHILTHKKQKKLQCDICLKTFLRRSDVTKHMHTHTGSTPYHCTICDASFCQNNALKGHMLTHTKQNEFQCDTCEKIFSRRCDLTRHIVTHTGQKPYQCTVCEKAYTQSCNLKAHMLKHKETVMGHFADNGLISDESVDSTGETILADM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01272770;
90% Identity
iTF_01272770;
80% Identity
iTF_01272770;