Ppal000244.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- -
- Assembly
- GCA_014825455.1
- Location
- QVNV01021968.1:266-9564[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 6.9e-06 0.00067 20.2 1.0 1 23 200 222 200 222 0.98 2 32 0.01 0.97 10.3 3.7 1 23 245 268 245 268 0.96 3 32 0.00067 0.065 14.0 0.5 2 23 275 297 274 297 0.96 4 32 0.038 3.7 8.5 0.2 1 21 319 339 319 340 0.94 5 32 0.0011 0.1 13.3 0.1 2 23 438 459 437 459 0.95 6 32 0.0058 0.56 11.0 0.3 1 23 465 488 465 488 0.95 7 32 0.0033 0.32 11.8 0.1 1 23 559 582 559 582 0.96 8 32 0.0049 0.48 11.3 0.7 1 23 588 611 588 611 0.96 9 32 0.068 6.6 7.7 0.8 1 23 624 646 624 646 0.97 10 32 3.9e-05 0.0038 17.9 0.9 3 23 689 710 688 710 0.96 11 32 4.2 4.1e+02 2.0 0.5 1 23 737 760 737 760 0.91 12 32 1.2 1.2e+02 3.8 1.0 2 23 767 790 766 790 0.94 13 32 0.25 24 5.9 0.0 2 23 799 821 799 821 0.94 14 32 0.67 65 4.6 0.0 1 23 827 850 827 850 0.95 15 32 1.4e-05 0.0014 19.2 1.2 1 23 858 880 858 880 0.98 16 32 0.074 7.2 7.6 0.9 3 23 932 954 930 954 0.92 17 32 0.0022 0.21 12.4 1.1 1 23 957 980 957 980 0.97 18 32 0.00019 0.018 15.7 0.3 2 23 987 1009 986 1009 0.96 19 32 0.001 0.098 13.4 3.9 1 21 1037 1057 1037 1058 0.95 20 32 0.003 0.29 12.0 1.8 2 23 1072 1093 1071 1094 0.93 21 32 0.4 38 5.3 1.1 1 23 1097 1120 1097 1120 0.94 22 32 0.013 1.3 9.9 1.1 2 23 1127 1150 1126 1150 0.90 23 32 3.4 3.3e+02 2.3 0.2 2 23 1158 1180 1158 1180 0.94 24 32 0.71 69 4.5 0.0 2 23 1187 1209 1186 1209 0.93 25 32 0.25 24 5.9 2.7 2 23 1218 1240 1218 1240 0.96 26 32 0.54 52 4.8 0.1 2 23 1246 1268 1245 1268 0.92 27 32 0.014 1.3 9.9 0.1 1 23 1330 1353 1330 1353 0.95 28 32 0.0015 0.15 12.9 0.9 1 22 1378 1399 1378 1399 0.95 29 32 0.35 34 5.4 1.9 2 23 1499 1521 1498 1521 0.94 30 32 0.72 69 4.5 0.5 2 23 1528 1550 1527 1550 0.94 31 32 0.77 74 4.4 2.5 1 23 1561 1583 1561 1583 0.97 32 32 0.07 6.8 7.6 0.1 1 19 1587 1605 1587 1607 0.95
Sequence Information
- Coding Sequence
- ATGGACATATTCGGCCAGGAAGGCAAGAACCGGCAACTCATCGACAAAATACAGACATGTTTGCCGTTCAAGATAGTGGAAGATGATCGGTTGCCGAAAGTTTTGTGTTATCGGTGTATGTACAATTTGGAAAATTTTTATGACTTCAGAACCGCGTGTGTAAATGCAAATGCTTGGTTGGAGAGGAACAGGCCAAAAGAAGACGTGAATGATGCGAATGACGCGCAATGCGACGAGATGCGTACGAACCTCCTTAGGGAAAACATGCCGGTGCTTATACCTGAAGCGCCTGTGGTCAATCCTAACGCGGCGTTGGGCACACCTCCGCGTTTGAATTCCGACGGCGAGGCGGATCCCGAGATAGAGGAGATCATTGACACAAGCGAAGGTACGGACGAAGTAATCGACGATTCGGAAGACCGGCGATCGGAGTACGAGTACGAGATGGACATGGAAACGAATCCCAGCGATTTTCTAGAGATGACACCGATGGTGACCGAGGAGAACGAAGAGGATTGCGGCGCGAACAATGCGAGTGTCGCGTCTGTTCAAGACACCGCGGCGGTTATTCCGCACACGTCGCAGCAACACGAAGTGTACGTTTGCTCTCTGTGCAACAAAGCGTTCAGCTCCAAGGGTCACTTGTCTTTGCACGCGAGGATACACGCGGGTGAAGGTGACGTGATTGGCGAGAGAGTGATAACCGACGACCATACTTCGTATCAGCGGCCATATCAATGTGATCTTTGTCATAAGTCGTATTCTACAGCGAAGCATCGTTGGGGACACGTTTCTACGACACATCGGGGACATCCTGCGGTAACGTGCGCATATTGCTCTCGCATATACTCAACGCGCTACAATCTTGACGAGCACATAAAGTCACGGCACGCCGGTCTACCGCCAAATCCCGAATTGTCGGTTTCCTTTTCCCGCGCGAACGATAACGGCAATTATCAGTGCCAAACGTGTTCGATGGTGTTCACGGACTTCGCCGTTTTTAACGCGCATCGTCAAATCTGCATGGAAGAGCAGCGTACGGATCTCCTGGATCAGACTGAGGCGCAGACCAATAAGAATATAGTTGATATATCCGACGCTTCGAGCGTGGATTCGGACGATGAGAACAAAGACTTTAAGAATGCCGAAGCTAAACTGGCGAAAAACCCTCAATTGACCATATTGAAGCACGCCTTGACCAAAGGAGACAGTTTGAAACGTAATCACGACGACGCCGGTTCCGCATCCATTTGCAAACTCAGGAAAATCACCAAAACAGATGATAGCGAGATTAATTCTCAGAAGAGATGGTATTGCGAAGTTTGTCCGCAAAGTTTTACGTCGATAGACAGCTTGAAAGAGCACGAGAGTATACACGACGCCGAGAAGCCTTTTATTTGCTTGCTGTGTAAGAAGGACTTCGGCGTTAAGACGACGTTAATAAAGCACATTATGCAAGTGCACGGTGTAGATCCCACTCCGATCGTAAACAGTAACAAATGTCTGAAAGCGTTGTCTCTGGATTGGAACAATCAGATAGACGTCGGTCTTTATGAACACACCGAGACGAAGGAGGAACCACCGAACTCGTCATCGCCTGAGATGACTATGGAAAACGACGACAAGGACTCGAAAGCTGATCCGGAAAACGAGTCGGTGGAAATCGAAACAGTATTTATATGCGAGCTTTGCGCGAGAGATTTCAACGATCGAGCGTCGTTGTGGTTACACATACGAGCGACGCACAAGGAAATTGCTGGTTTTGCGTGCGGAGTGTGTCTAAAGATATGCACCGACAACATACAGTTGCAAAATCATCTAAATATGTATCACGCGGCGTCGCATCTCTTTTTATCGGTGCAGAGAAGGTACAGCTGCACGATATGCGGTAGACAGCATGACTCGAGGAAAAAGCTAATCGCTCACGTCTCTATACATAATCTCGATCCTACATATGATCCCGCACATTTTGTACGATTGAATAGCATTTATTGTAACGACAACCTAAACGGCAATGAGGGAAACGAGCAAGATTTCGATGGGGATGACAGCGAAAAGGTCGATTGTTACATTTGTTACAAATCGTTCCCGAACGAGGATCACCTTATACGACATCAGAGAAACGCTCACAAGCCTGAACAATTAGTTCCATTAGGAGACGCGCAGAGTGTCAATGGCAATAGTAATAGAGCACAGTATCATTTATTCTTTGTGTGCGAGGTGTGCGGCAGTTCTCACTCGAGCAAATGGGAACGTTGGTTACATATCAGTAGCAAACATAGCAACGAATCTTCCATTAAATGTGAATATGAGAATTGTGAGATGCTATTTGCCACGAAATCGTTGCGCAACGACCATATCCAGCATCATGTGATTCAGGGTCCGATACCGAATACGTGCGAGGTGTGCGGTAAGCTCTGGCCTACCCGTGTCGATTATTGGAAACATATGATGGGCGTGCACACGGCCACGGTGCCTTTTATCTGCGGCGTTTGTTTGAAAGTAGTTGCCAATGTGTTGAAGTTGCAGGCGCACGTAAGAGCGAAACATTGGCCGTTGACCAATGGTGATTTTAGCTGTGATATTTGCGGTAGACCGTATTCCAATAAATCGAAGATGTCGCGGCACAGAAAGATTCACGGCCTAGAGGCGGCGTTGGCTGCGGCAGCTGCGACCGCAACAGGGGAAGGGGACGTCGTGTGCGACAACAGCAGCTTCAATGAGGCGACCAACGAATCAATGATGATCAAACTCGAACAAAACAACGGCGCCGCTGCGGAGGTCGAATTGAATTGCGAGCAATGTCCCGATCTGAGCTTCTCGTCCTTGGACAGTTTGTGCAATCACCGGCGGTTGGTACACGGTCTTTTCCCGTGTGATCTGTGTGTCAAGTTCTACGGCAGAACGTCGCATTTGTGGAAGCACGTGAACAGAGTGCACAAGGGCCATGCGGACGTAACTTGTCCGTATTGTTCGAAAACCAGCGCGTCGAGGGATCATCTGGCCGCGCATATCGCGAAGAATCACAGATACGTGCCCGCGATCGGCAAGGACAGTCAGAACTGCGTCGCTTCCAAGTCTCTTCAGAACGTGGAGGACGGCGTCCAGCATTACTGCGAGAAATGCAACAAGGGATTCCACAAACGTTATCTTTTGCGACGTCACATGAAGGGTTGTCAGAACTATCGCAAGGATCCGGGCGCGTTGCTGACTCGTTGCAGAGCCTGCGAGAGAATATTCAAAGATCGCGCGAGTCTGCAGAAGCACATCGAGAATCATCATACCACGTACACGTGCCACTTGTGCAACGAAACTATCACATCCAAATTGGGCATTATGACGCACAACCGCGTCAATCACATGGACCATCCGGATCTCACGTGCAGCCAACCGAGCTGCAAGAAACTCTTCCGTACGAAGGAGGATCTGGAGTCCCATAGGAAGGACCATAAATATCACAGCAGTCCGAACGTGTGCGATTTTTGTGGCGACACCGTTGAGAACAAGCTGAAATTGAAGATGCACGTGCTTTCGTTACATCGAAATGAGATCGGTGTATCTTGCGGTGTCTGTCTCATTCCAATGAAAGATCCGAAAGATTTGAAGAAACACGTTGAAACGGAGCACAGCAGCGTTCTTACCAAACCAAATACGTGTCAAGTATGCGGCAAGCAGTACGCGTCCAAGTGGAAGGCCTTTGATCACACCAAGAAGTGTCACGGAAAAGTTTTCCTCACGTGCAAGCAATGTCTGGCGGTCTTCACGGACGAGAATGACATACGCGATCACTACGAATACGTGCACAACGTTCCGAAGGATCAGTTGTCCATTTTCGAGTACAAAATGGACGTCGGTGCGAAGAGAGAGGGTCACGAAACACCCGACATCGTCGTGAAGGAGGAACCGGACGATCTGGAGTTTGACGAGGAGATATGCGACGAGAGTTCGAACGACTCGCGCAAACGGAAGCGAAACCCGAACGATACTTACGACTGCGAGATGTGTCCGGAGATATTCCTGAACCAGGACACTCTCGCCAAGCATTACCAGAATGTTCACAACACCGATCCCGTTCGCATGTTTAAGAAGTTCAAGGACATCGGCGACAAGCGCAAGAGAAATAGGAACAACTTCGAGTGCAAGAATTGCAAGAGGCAGTTTCCGACGAAGACTCTGTTCTGGAATCACATAAGCACGTGCGTGCCGCGAAATTCATTGCGCAGATACGATTTCGCGAACAACATATCGACGTCGATTTTGGAGTCTCATTTGAAGAACAACAATCAGATTCAGCGGGAGGAGCTGATGCCGATTACCAACGAGTCCAATCTGAATATTCCCGACTTCAATTTGTTCGAGGACATCAATATGCAACTGTCGGCACAGAAGCCCGTGCCGAATCTCATGCCGTTGTCGCACATGAAATCGGGGAACGGAAAATGTTCGAGGAAGGATTCGCGCAAAGTGTACGACGAATCGACCAATACCACTTGCACGTGCGAAGTATGCGGCAAGCAGTGGCCCGCCAAGAAGCACTTGTGGCAACACTTGATACGCTTCCATCGCGCCGAAGCCGCGGTGACGTGCGGCGTATGTCTGAAGCTGTGTAAGTCGTACGAAGATCTGTCTGATCATCTGAAGGCCGAGCACGCCCCAGTTTTGTCGCCGGAAGGTAACAACTTTACTTGCAAAACGTGCGGTAGATATCACAACGCGAGGAGTAAATTGCTGTTGCACATGAGCATTCATATCGGGAACTTCCGATGTCAAAAGTGTCAGCAGGGCTTCGCGAGTGAGGAGAAGCTCAGTGAACACGCGGCTCTAGGCTGCAGCGGCAGATCGGAGTGCGAGGATCAAGCAATGACCGCGGATGAGGACAACACAAAGAACGACAATGACGAGAAGGGTAGTTTGATCGCCGACGAGACATCGGCCATCGAAGAAGCGGAGGAAGAAGCGGAGGACTTCGAATCGGAGGGCGTCGAAAGCAGGGACATAAACGACGAAGAGGACAGCAACAGCGAGGAGGACAACTCGGAAAATAGCGACTCGGATAGCGCTAGTAGCAGTTCGAGCGACGACGAGGACGAAGAGAAAGACGAACAGGAAGAGGAAGAAGCGGAAGAGACGGAGGAGACGGAGGACGCAGAAGAAATAGAGGCAGACGAGGTAGCCTTTGAAAATAATGAGAACGAGTCCGGGACGAGGACCACAAGCAGGGCGAGCGACAATAGTGTATCGTGTTCTTCCGAGAGCGAAGATTCCGACATGGATGAAGCAGAAGTGCGTACCGTGCAAAAGGAAGCGCCCCAAGTGAGCAACATGTTCGAGATACGTGACGACGGTATTCAAGAGAATTTGACAAATACTGAAAATCAGAAAACCGATCTCGCGTCTGTCGACCGAACAGACGCGGAACAGACGAGACCAATTGACGCGAATGATCTATTAGTTTCTAACGAACCTATGAACGTGGATAAATTTGAGACGTTGCATCTTGAAGAAAAGTCGTCTGCTAAAGCTGCGACGAGCGACGTAGAATTGTCTGACGATAACGAGGATGACAAGGAAGAAGAGAACAACGAAAACGACGAAGAGGACGAAGAAGAAGAAGGTGAGGATGAGACCGAGAGCGAGGATGAGACCGAAGAAGCGGGAGAAGGGGAAGACGAGGAGGAGGAAGAAGAGGAGGACGACGGGCCGCCAGTGCTGAGTCCGATAATGCCTTTGTTGCAAGAAAACGAAGCCGAGGAGCATAGCAACATAGATCGGCACAAGCTTAGTCCGATGGTCTCCCTCAACATGCACAAAGATTTGGAAGAAGAGATAACGGAAGTACAAAACAGCGCGGAGAACGCGGACCCGTCGTCGAACGCGGCCACCTTCTACGCGGCGAACAACAGCGATCTGTCCGTAACGTGGCACTCGGACTCGGACGACAACGGCGAACGCGATTGCGACTCGGACATCGGAGACAAGGATGTGATAGTGGTGAACAATCAGTTCGACAAGGCGTACGAGAAGATGGAGGTTGACGAGGACGAGAACTTCGAGGAGGATTCCATGGATGAGAACACGATGGACGACGACAGGGACGACGGAGCTGACGAGCAACAGGTGCACGAGATACACAATCTCGACGGGACCGTGTTAATGGTGGCGAATGACGCGGAAGGTAATCAGATATTGATAGAGCAGAACGTGTTGGATATCGAGAACGAGGATTCCAACGCCGAAATGACGCAGTACATTTACCCGGAGAACGCTTACGAGATCGTGGAGGAGGATTACGGGACGCGCAACGAAGCCGAGGACATGCAAACGGACGAGATGGGCGGTGATGTGACTTACGTTCAGAACACATCGGAGAACGAGGAGGACAGCATGGAGGCCGGAGATATCGAGGAGAACAGTGACGACATACAGAAATAG
- Protein Sequence
- MDIFGQEGKNRQLIDKIQTCLPFKIVEDDRLPKVLCYRCMYNLENFYDFRTACVNANAWLERNRPKEDVNDANDAQCDEMRTNLLRENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEIIDTSEGTDEVIDDSEDRRSEYEYEMDMETNPSDFLEMTPMVTEENEEDCGANNASVASVQDTAAVIPHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHAGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPNPELSVSFSRANDNGNYQCQTCSMVFTDFAVFNAHRQICMEEQRTDLLDQTEAQTNKNIVDISDASSVDSDDENKDFKNAEAKLAKNPQLTILKHALTKGDSLKRNHDDAGSASICKLRKITKTDDSEINSQKRWYCEVCPQSFTSIDSLKEHESIHDAEKPFICLLCKKDFGVKTTLIKHIMQVHGVDPTPIVNSNKCLKALSLDWNNQIDVGLYEHTETKEEPPNSSSPEMTMENDDKDSKADPENESVEIETVFICELCARDFNDRASLWLHIRATHKEIAGFACGVCLKICTDNIQLQNHLNMYHAASHLFLSVQRRYSCTICGRQHDSRKKLIAHVSIHNLDPTYDPAHFVRLNSIYCNDNLNGNEGNEQDFDGDDSEKVDCYICYKSFPNEDHLIRHQRNAHKPEQLVPLGDAQSVNGNSNRAQYHLFFVCEVCGSSHSSKWERWLHISSKHSNESSIKCEYENCEMLFATKSLRNDHIQHHVIQGPIPNTCEVCGKLWPTRVDYWKHMMGVHTATVPFICGVCLKVVANVLKLQAHVRAKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEAALAAAAATATGEGDVVCDNSSFNEATNESMMIKLEQNNGAAAEVELNCEQCPDLSFSSLDSLCNHRRLVHGLFPCDLCVKFYGRTSHLWKHVNRVHKGHADVTCPYCSKTSASRDHLAAHIAKNHRYVPAIGKDSQNCVASKSLQNVEDGVQHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCSQPSCKKLFRTKEDLESHRKDHKYHSSPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVETEHSSVLTKPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEYVHNVPKDQLSIFEYKMDVGAKREGHETPDIVVKEEPDDLEFDEEICDESSNDSRKRKRNPNDTYDCEMCPEIFLNQDTLAKHYQNVHNTDPVRMFKKFKDIGDKRKRNRNNFECKNCKRQFPTKTLFWNHISTCVPRNSLRRYDFANNISTSILESHLKNNNQIQREELMPITNESNLNIPDFNLFEDINMQLSAQKPVPNLMPLSHMKSGNGKCSRKDSRKVYDESTNTTCTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYEDLSDHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASEEKLSEHAALGCSGRSECEDQAMTADEDNTKNDNDEKGSLIADETSAIEEAEEEAEDFESEGVESRDINDEEDSNSEEDNSENSDSDSASSSSSDDEDEEKDEQEEEEAEETEETEDAEEIEADEVAFENNENESGTRTTSRASDNSVSCSSESEDSDMDEAEVRTVQKEAPQVSNMFEIRDDGIQENLTNTENQKTDLASVDRTDAEQTRPIDANDLLVSNEPMNVDKFETLHLEEKSSAKAATSDVELSDDNEDDKEEENNENDEEDEEEEGEDETESEDETEEAGEGEDEEEEEEEDDGPPVLSPIMPLLQENEAEEHSNIDRHKLSPMVSLNMHKDLEEEITEVQNSAENADPSSNAATFYAANNSDLSVTWHSDSDDNGERDCDSDIGDKDVIVVNNQFDKAYEKMEVDEDENFEEDSMDENTMDDDRDDGADEQQVHEIHNLDGTVLMVANDAEGNQILIEQNVLDIENEDSNAEMTQYIYPENAYEIVEEDYGTRNEAEDMQTDEMGGDVTYVQNTSENEEDSMEAGDIEENSDDIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269217; iTF_01269963; iTF_01267728; iTF_01267033;
- 90% Identity
- iTF_01269217; iTF_01269963; iTF_01267728; iTF_01267033;
- 80% Identity
- -