Pcub002578.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- -
- Assembly
- GCA_014825685.1
- Location
- QVOA01021426.1:6297-15599[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 6.7e-06 0.00073 20.3 1.0 1 23 197 219 197 219 0.98 2 32 0.0097 1.1 10.3 3.7 1 23 242 265 242 265 0.96 3 32 0.00065 0.071 14.0 0.5 2 23 272 294 271 294 0.96 4 32 0.037 4 8.5 0.2 1 21 316 336 316 337 0.94 5 32 0.001 0.11 13.4 0.1 2 23 435 456 434 456 0.95 6 32 0.004 0.43 11.5 0.3 1 23 462 485 462 485 0.95 7 32 0.0032 0.34 11.8 0.1 1 23 556 579 556 579 0.96 8 32 0.0048 0.52 11.3 0.7 1 23 585 608 585 608 0.96 9 32 0.066 7.2 7.7 0.8 1 23 621 643 621 643 0.97 10 32 3.8e-05 0.0042 17.9 0.9 3 23 686 707 685 707 0.96 11 32 4.1 4.4e+02 2.1 0.5 1 23 735 758 735 758 0.91 12 32 1.2 1.3e+02 3.8 1.0 2 23 765 788 764 788 0.94 13 32 0.24 26 5.9 0.0 2 23 797 819 797 819 0.94 14 32 0.65 71 4.6 0.0 1 23 825 848 825 848 0.95 15 32 1.4e-05 0.0015 19.3 1.2 1 23 856 878 856 878 0.98 16 32 0.072 7.8 7.6 0.9 3 23 930 952 928 952 0.92 17 32 0.0021 0.23 12.4 1.1 1 23 955 978 955 978 0.97 18 32 0.00018 0.02 15.7 0.3 2 23 985 1007 984 1007 0.96 19 32 0.00098 0.11 13.4 3.9 1 21 1035 1055 1035 1056 0.95 20 32 0.0029 0.31 12.0 1.8 2 23 1070 1091 1069 1092 0.93 21 32 0.38 42 5.3 1.1 1 23 1095 1118 1095 1118 0.94 22 32 0.013 1.4 9.9 1.1 2 23 1125 1148 1124 1148 0.90 23 32 3.3 3.6e+02 2.3 0.2 2 23 1156 1178 1156 1178 0.94 24 32 0.69 75 4.5 0.0 2 23 1185 1207 1184 1207 0.93 25 32 0.24 26 5.9 2.7 2 23 1216 1238 1216 1238 0.96 26 32 0.52 57 4.9 0.1 2 23 1244 1266 1243 1266 0.92 27 32 0.013 1.5 9.9 0.1 1 23 1328 1351 1328 1351 0.95 28 32 0.0054 0.59 11.1 1.5 1 21 1376 1396 1376 1397 0.94 29 32 0.34 37 5.4 1.9 2 23 1497 1519 1496 1519 0.94 30 32 1.2 1.3e+02 3.8 0.7 2 23 1526 1548 1525 1548 0.94 31 32 0.74 81 4.4 2.5 1 23 1559 1581 1559 1581 0.97 32 32 0.068 7.4 7.7 0.1 1 19 1585 1603 1585 1605 0.95
Sequence Information
- Coding Sequence
- ATGGACATATTCGGCCAGGAAGGCAAGAACCGGCAACTTATCGACAAAATACAGACATGTTTGCCGTTCAAGATAGTGGAAGATGATCGGTTGCCGAAAGTTTTGTGTTATCGGTGTATGTACAATTTGGAAAATTTTTATGACTTCAGAACCGCGTGTGTAAATGCAAACGCTTGGTTGGAGAGGAACAGGCCAAAAGAAGACGTAAATGACGCGCAATGCGACGAGATGCGTACGAACCTCCTGAGGGAAAACATGCCGGTGCTTATACCTGAGGCGCCTGTGGTCAATCCTAACGCGGCGTTGGGCACACCTCCGCGTTTGAATTCCGACGGCGAGGCGGATCCCGAGATAGAGGAGATCATTGACACAAGCGAAGGTACGGACGAAGTAATCGACGATTCGGAAGACCGGCGATCGGAGTACGAGTACGAGATGGACATGGAGACGAATCCCAGCGATTTTCTGGAGATGACGCCGATGGTGACCGAGGAGAACGAAGAGGATTGCGGCGCGAACAATGCGAGTGTCGCGGCTGTTCAGGACACCGCGGCGGTTCTTCCGCACACGTCGCAGCAACACGAAGTGTACGTTTGCTCTCTGTGCAACAAAGCGTTCAGCTCGAAGGGTCACTTATCTTTGCACGCAAGGATACACGCGGGCGAAGGTGACGTGATTGGCGAGAGAGTGATCACCGACGACCATACTTCGTATCAGCGGCCATATCAATGTGATCTTTGTCATAAGTCGTATTCTACGGCGAAGCATCGTTGGGGACACGTTTCCACAACACATCGGGGACATCCTGCGGTAACGTGCGCATATTGCTCCCGCATATACTCGACGCGCTACAATCTTGACGAGCACATAAAGTCACGGCACGCCGGTCTACAGTCAAATGCCGAATTGTCGGTTTCCTTTGCCCGCGCGAACGATAACGGCAATTATCAGTGCCAAACGTGTTCGATGGTGTTCACGGACTTCGCCGTTTTTAACGCGCATCGTCAAATCTGCATGGAAGAGCAGCGTACGGATCTCCTGGATCAGACTGAGACGCAGACCAATAAGAATTTAGTTGATATATCCGACGCCTCGAGCGTGGACTCGGACGATGAGAACAAAGACTTTAAGAATGCCGAAGCTAAACTGGCGAAAAACCCTCAATTGACCATATTGAAGCACGCCTTGACCAAAGGAGACAGTTTGAAACGTAATCACGACGACGCCGGCTCCGCATCCATTTGCAAACTCAGGAAAATCACCAAAACAGATGATAGCGACATTAATTCTCAGAAGAGATGGTATTGCGAAGTTTGTCCGCAAAGTTTTACGTCAATAGACAGCTTGAAAGAGCACGAGAGCATACACGACGCCGAGAAGCCTTTTATTTGCTTGCTATGTAAGAAGGACTTCGGCGTTAAGACGTCGTTAATAAAGCATATTATGCAAGTGCACGGTGTGGATCCCACTCCGATCGTCAACAGTAACAAATGTCTGAAAGCGTTGTCTCTGGATTGGAACAATCAGATAGACGTCGGTCTTTATGAACACACCGAGACGAAGGAGGAACCACCGAACTCGTCATCGCCTGAGATGATTATGGAAAATGACGACAAAGACTCGAAAGTTGATCCGGAAAACGAGTCGGTGGAAATCGAAACAGTATTCATATGCGAGCTTTGCGCAAGAGATTTCAACGACCGAGCGTCGTTGTGGTTACACATACGAGCGACGCACAAGGAAATTGCTGGTTTTGCGTGCGGAGTTTGTCTGAAGATATGCACCGACAACATACAGTTGCAAAATCATCTAAATATGTATCACGCGGCGTCGCATCTCTTTTTATCGGTGCAGAGAAGGTACAGCTGCACAATATGCGGCAGACAGCATGACTCGAGGAAAAAGCTAATCGCTCACGTCTCTATACATAATCTCGATCCTACATATGATCCCGCACATTTTGTACGATTAAATAGCATTTATTGTAACGACAACCTAAACGGCAATGAGGGAAACGAGCAAGATTTCGACGGGGATGAAAGCGAAAAGGTCGATTGTTACATTTGTTACAAATCGTTCCCGAACGAGGATCACCTTATACGACATCAGAGAAACGCTCACAAGTCTGAACAATTAGTTCCGTTAGGAGGAGACGGGCAGAGTGTCAATGGCAATAGTAATAGAGCACAGTATCATTTATTCTTTGTGTGCGAGGTGTGCGGCAGTTCTCACTCGAGCAAATGGGAACGTTGGTTACATATCAGTAGCAAACATAGCAACGAAGCTTCCATTAAATGTGAATATGAGAATTGTGAGATGCTATTTGCCACGAAATCGTTGCGCAACGACCATATCCAGCATCATGTGATTCAGGGTCCGATACCGAATACGTGCGAGGTGTGCGGTAAGCTCTGGCCTACCCGCGTCGATTATTGGAAACATATGATGGGCGTGCACACGGCCACGGTGCCTTTTATCTGCGGCGTTTGTCTGAAAGTAGTTGCCAATGTGTTGAAGTTGCAGGCGCACGTAAGGGCGAAACATTGGCCGTTGACCAATGGTGATTTTAGCTGTGATATTTGCGGTAGACCGTATTCCAATAAATCGAAGATGTCGCGGCACAGAAAGATTCACGGCCTAGAAGCGGCGTTGGCTGCGGCTGCTGCGACCGCAACAGGGGAAGGGGATGTCGTGTGCGACAACAGCAGTTTCAATGAGGCGACCAACGAATCAATGATGATCAAGCTCGAGCAAAACAACGGCGCCGCTGTGGAGGTCGAATTGAATTGCGAGCAATGTCCCGATCTGAGCTTCTCGTCCTTGGATAGTTTGTGCAACCACCGGCGGTTGGTACACGGCCTTTTCCCGTGCGATCTGTGTGTCAAGTTCTACGGCAGAACCTCGCATTTGTGGAAGCACGTGAACAGAGTGCACAAGGGCCACGCGGACGTAACTTGTCCGTATTGTTCGAAAACCAGCGCGTCGAGGGATCATCTGGCCGCGCATATCGCGAAGAATCACAGATACGTGCCCGCGATCGGCAAGGACAGTCAGAACTGCGTCGCTTCCAAGTCTCTCCAGAACGTGGAGGACGGCGTCCAGCATTACTGCGAGAAATGCAACAAGGGATTCCACAAACGTTATCTTTTGCGACGTCACATGAAGGGTTGTCAGAACTATCGCAAGGATCCGGGCGCGTTGCTGACTCGTTGCAGAGCCTGCGAGAGAATATTCAAAGATCGCGCGAGTTTGCAGAAGCACATCGAGAATCATCACACCACGTACACGTGTCACTTGTGCAACGAAACTATCACATCCAAACTGGGCATTATGACGCACAACCGCGTCAATCACATGGACCATCCGGATCTCACGTGCAGCCAACCGAGCTGCAAGAAACTCTTCCGTACGAAGGAGGATCTGGAGTCCCATAGGAAAGATCATAAATATCACAGCAATCCGAACGTGTGCGATTTTTGTGGCGACACCGTTGAGAACAAGCTGAAGTTGAAAATGCACGTGCTTTCGTTACATCGAAATGAGATCGGTGTATCTTGCGGTGTCTGTCTCATTCCCATGAAAGATCCGAAAGATTTGAAGAAACACGTTGAAACGGAGCACAGCAGTGTTCTCACCAAACCAAATACGTGTCAAGTATGCGGCAAGCAGTACGCGTCTAAGTGGAAGGCTTTTGATCACACCAAGAAGTGTCACGGAAAGGTTTTCCTCACGTGCAAGCAATGTCTGGCGGTTTTCACGGATGAGAATGATATACGCGATCATTACGAATACGTGCACAACGTTCCGAAGGATCAGTTGTCCATTTTCGAGTACAAAATGGACGTCGGTGCGAAGAGAGAGGGTCACGAAACACCCGACATCGTCGTGAAGGAGGAACCGGACGATCTGGAGTTCGACGAGGAGATATGCGACGAGAGCTCGAACGACTCGCGCAAACGGAAGCGAAACCCGAACGATACTTACGACTGCGAGATGTGTCCGGAGATATTCCTGAACCAGGACACTCTCGCCAAGCATTACCAGAATGTTCACAACACCGATCCCGTTCGCATGTTTAAGAAGTTCAAGGACATCGGCGACAAACGCAAGAGAAATAGGAACAACTTCGAGTGCAAGAATTGCAAGAGGCAGTTTCCGACGAAGACTCTGTTCTGGAATCACACAAGCACGTGCGTGCCGCGAAATTCAATGCGCAGATACGATTTCGCGAACAACATATCGACGTCGATTTTGGAGTCTCATTTGAAGAACAACAATCAGATTCAGCGGGAGGAGCTGATGCCGCTGACCAACGAGTCCAATCTGAATATTCCCGACTTCAATTTGTTCGAGGACATCAATATGCAACTGTCGGCACAGAAACCCGTGCCGAATCTCATGCCGTTGTCGCACATGAAATCGGGGAACGGAAAATGTTCGAGGAAAGATTCGCGCAAGGTGTACGACGAATCGACCAATACAACGTGCACGTGTGAAGTATGCGGCAAGCAGTGGCCCGCTAAGAAGCACTTGTGGCAACACTTGATACGGTTCCATCGCGCTGAAGCTGCGGTTACGTGCGGCGTATGTCTGAAGCTGTGCAAGTCGTACGAAGATCTGTCTTATCATCTCAAGGCCGAGCACGCTCCAGTTTTGTCGCCGGAGGGTAACAACTTTACCTGCAAAACGTGCGGCAGATATCACAACGCGAGGAGCAAATTGCTGTTGCACATGAGCATTCATATCGGGAACTTCCGATGTCAAAAGTGTCAGCAGGGCTTCGCGAGCGAGGAGAAGCTCAGCGAACACGCGGCGCTCGGTTGCAGCAGCAGGTCGGAGTGCGAGGATCAAGCAATGACCGCTGATGAGGACAACACGAAGAACGACAATGACGAGAAGGGTAGTTTGATTGCCGATGAGACATCGGCCATCGAAGAAGTGGAGGAAGAAGCGGAGGACTTCGAATCGGAGGGCGTTGAAAGCAGGGACATAAACGACGAAGAGGACAGCAACAGCGAGGAGGACAACTCGGAAAATAGCGACTCGGATAGCGCTAGTAGCAGTTCGAGCGACGACGAGGACGAAGAGAAAGACGAACAGGAAGAGGAGGAAGTGGAGGAGGCGGAGGAGGCGGAAGGGGGAGAGGAAGACGATGAAGACAATGAGAACGAGTCCGGGACGACCCCAAGTAGACCGAGCGACAACAGTGTATCGTGTTCTTCCGAGAGCGAAGATTCCGACATGGATGAAGCAGAAGTGCGTACCGTGCAAAAGGAAGCGCCCCAGGTGAGCAACATGTTCGAGATACGTGACGACGGTATTGAAGAGAATTTGACAAATGTTGAAGATCAGAAAACCGATCTCGCGTCTGCTGGCCGAACAGACGCGGAACAGACGAGACCAAGTGACGCGAATGATCTATTAGTTTCTAACAAACCTATGAACATAGATAAATTTGAGGCGTTGCATCTTGATAAGTCGCCTGCTAAAGCTGCGACGAGTGACGTAGAATTGTCTGACGATAACGAGGATGACAAGGAAGAAGAGAACAACGAAAATGACGAAGAAAACGAAGAAGAAGAAGAAGAAGGTGAAGATCAGGCCGAGAGCGAGGATGAGACCGAAGCGGAAGAAGAAGAAGAAGACGAGGAGGAAGAGGAGGAGGAAGATGACGACGGGCCGCCGGTGCTGAGTCCGATAATGCCTTTGTTGCAGGAAAACGAAGCCGAAGAGCATAGCAACATAGATCGACACAAGCTTAGTCCGATGGTTTCTCTCAACATGCACAAAGATTTGGAAGAATGCGAGATAACGGAAGTACAAAACAGCGCGGAGAACGCGGATCCGTCGTCGAACGCGGCCACCTTCTACGCGGCGAACAACAACGATCTGTCCGTAACGTGGCACTCGGACTCGGACGACAACGGCGAACGCGATTGCGACTCGGACATCGGAGACAAGGATGTGATAGTGGTGAACAACCAGTTCGACAAAACGTACGAGAAGATGGAGGTTGACGAGGACGAGAACTTCGAGGAGGATTCCATGGATGAGAACACGATGGACGACGACAGGGACGACGGAGCTGACGAGCAACAGGTGCACGAGATACACAATCTCGACGGGACCGTGTTAATGGTGGCGAATGACGCGGAGGGTAATCAGATATTGATAGAACAGAACATGTTGGATATCGAGAACGAGGATTCCAACGCCGAAATGACGCAGTACATTTACCCGGAGAACACTTACGAGATCGTGGAGGAGGATTACGGGACGCGCAACGAAGCCGAGGACATGCAAACGGACGAGATGGGCGGTGATGTGACTTACGTTCAGAACACATCGGAGAACGAGGAGGACAGCATGGAAGCCGGAGATATGGAGGAGAACAGTGACGACATACAAAAATAG
- Protein Sequence
- MDIFGQEGKNRQLIDKIQTCLPFKIVEDDRLPKVLCYRCMYNLENFYDFRTACVNANAWLERNRPKEDVNDAQCDEMRTNLLRENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEIIDTSEGTDEVIDDSEDRRSEYEYEMDMETNPSDFLEMTPMVTEENEEDCGANNASVAAVQDTAAVLPHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHAGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLQSNAELSVSFARANDNGNYQCQTCSMVFTDFAVFNAHRQICMEEQRTDLLDQTETQTNKNLVDISDASSVDSDDENKDFKNAEAKLAKNPQLTILKHALTKGDSLKRNHDDAGSASICKLRKITKTDDSDINSQKRWYCEVCPQSFTSIDSLKEHESIHDAEKPFICLLCKKDFGVKTSLIKHIMQVHGVDPTPIVNSNKCLKALSLDWNNQIDVGLYEHTETKEEPPNSSSPEMIMENDDKDSKVDPENESVEIETVFICELCARDFNDRASLWLHIRATHKEIAGFACGVCLKICTDNIQLQNHLNMYHAASHLFLSVQRRYSCTICGRQHDSRKKLIAHVSIHNLDPTYDPAHFVRLNSIYCNDNLNGNEGNEQDFDGDESEKVDCYICYKSFPNEDHLIRHQRNAHKSEQLVPLGGDGQSVNGNSNRAQYHLFFVCEVCGSSHSSKWERWLHISSKHSNEASIKCEYENCEMLFATKSLRNDHIQHHVIQGPIPNTCEVCGKLWPTRVDYWKHMMGVHTATVPFICGVCLKVVANVLKLQAHVRAKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEAALAAAAATATGEGDVVCDNSSFNEATNESMMIKLEQNNGAAVEVELNCEQCPDLSFSSLDSLCNHRRLVHGLFPCDLCVKFYGRTSHLWKHVNRVHKGHADVTCPYCSKTSASRDHLAAHIAKNHRYVPAIGKDSQNCVASKSLQNVEDGVQHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCSQPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVETEHSSVLTKPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEYVHNVPKDQLSIFEYKMDVGAKREGHETPDIVVKEEPDDLEFDEEICDESSNDSRKRKRNPNDTYDCEMCPEIFLNQDTLAKHYQNVHNTDPVRMFKKFKDIGDKRKRNRNNFECKNCKRQFPTKTLFWNHTSTCVPRNSMRRYDFANNISTSILESHLKNNNQIQREELMPLTNESNLNIPDFNLFEDINMQLSAQKPVPNLMPLSHMKSGNGKCSRKDSRKVYDESTNTTCTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYEDLSYHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASEEKLSEHAALGCSSRSECEDQAMTADEDNTKNDNDEKGSLIADETSAIEEVEEEAEDFESEGVESRDINDEEDSNSEEDNSENSDSDSASSSSSDDEDEEKDEQEEEEVEEAEEAEGGEEDDEDNENESGTTPSRPSDNSVSCSSESEDSDMDEAEVRTVQKEAPQVSNMFEIRDDGIEENLTNVEDQKTDLASAGRTDAEQTRPSDANDLLVSNKPMNIDKFEALHLDKSPAKAATSDVELSDDNEDDKEEENNENDEENEEEEEEGEDQAESEDETEAEEEEEDEEEEEEEDDDGPPVLSPIMPLLQENEAEEHSNIDRHKLSPMVSLNMHKDLEECEITEVQNSAENADPSSNAATFYAANNNDLSVTWHSDSDDNGERDCDSDIGDKDVIVVNNQFDKTYEKMEVDEDENFEEDSMDENTMDDDRDDGADEQQVHEIHNLDGTVLMVANDAEGNQILIEQNMLDIENEDSNAEMTQYIYPENTYEIVEEDYGTRNEAEDMQTDEMGGDVTYVQNTSENEEDSMEAGDMEENSDDIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01271393;
- 90% Identity
- iTF_01271393;
- 80% Identity
- -