Basic Information

Insect: Pseudomyrmex concolor
Gene Symbol: -
Assembly: GCA_014839585.1
Location: QVOB01006970.1:2860-9002[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.00027 0.031 15.1 0.1 2 23 113 134 112 134 0.95

2 27 0.0031 0.35 11.8 0.3 1 23 140 163 140 163 0.95

3 27 3.6 4.1e+02 2.2 0.0 1 16 234 249 234 250 0.91

4 27 0.051 5.8 8.0 0.8 1 23 251 273 251 273 0.97

5 27 2.9e-05 0.0033 18.2 0.9 3 23 316 337 315 337 0.96

6 27 3.1 3.5e+02 2.3 0.5 1 23 364 387 364 387 0.91

7 27 0.9 1e+02 4.1 1.0 2 23 394 417 393 417 0.94

8 27 0.18 21 6.2 0.0 2 23 426 448 426 448 0.94

9 27 0.5 57 4.9 0.0 1 23 454 477 454 477 0.95

10 27 1.1e-05 0.0012 19.5 1.2 1 23 485 507 485 507 0.98

11 27 0.086 9.8 7.3 0.9 3 23 559 581 557 581 0.92

12 27 0.0016 0.19 12.7 1.1 1 23 584 607 584 607 0.97

13 27 0.00014 0.016 16.0 0.3 2 23 614 636 613 636 0.96

14 27 0.00076 0.085 13.7 3.9 1 21 664 684 664 685 0.95

15 27 0.0022 0.25 12.3 1.8 2 23 699 720 698 721 0.93

16 27 0.3 33 5.6 1.1 1 23 724 747 724 747 0.94

17 27 0.01 1.1 10.2 1.1 2 23 754 777 753 777 0.90

18 27 2.5 2.9e+02 2.6 0.2 2 23 785 807 785 807 0.94

19 27 0.53 60 4.8 0.0 2 23 814 836 813 836 0.93

20 27 0.19 21 6.2 2.7 2 23 845 867 845 867 0.96

21 27 0.4 46 5.1 0.1 2 23 873 895 872 895 0.92

22 27 0.01 1.2 10.2 0.1 1 23 957 980 957 980 0.95

23 27 0.0011 0.13 13.2 0.9 1 22 1003 1024 1003 1024 0.95

24 27 0.26 30 5.7 1.9 2 23 1124 1146 1123 1146 0.94

25 27 0.54 61 4.8 0.5 2 23 1153 1175 1152 1175 0.94

26 27 0.57 65 4.7 2.5 1 23 1186 1208 1186 1208 0.97

27 27 0.057 6.4 7.8 0.1 1 19 1212 1230 1212 1232 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.00027	0.031	15.1	0.1	2	23	113	134	112	134	0.95
2	27	0.0031	0.35	11.8	0.3	1	23	140	163	140	163	0.95
3	27	3.6	4.1e+02	2.2	0.0	1	16	234	249	234	250	0.91
4	27	0.051	5.8	8.0	0.8	1	23	251	273	251	273	0.97
5	27	2.9e-05	0.0033	18.2	0.9	3	23	316	337	315	337	0.96
6	27	3.1	3.5e+02	2.3	0.5	1	23	364	387	364	387	0.91
7	27	0.9	1e+02	4.1	1.0	2	23	394	417	393	417	0.94
8	27	0.18	21	6.2	0.0	2	23	426	448	426	448	0.94
9	27	0.5	57	4.9	0.0	1	23	454	477	454	477	0.95
10	27	1.1e-05	0.0012	19.5	1.2	1	23	485	507	485	507	0.98
11	27	0.086	9.8	7.3	0.9	3	23	559	581	557	581	0.92
12	27	0.0016	0.19	12.7	1.1	1	23	584	607	584	607	0.97
13	27	0.00014	0.016	16.0	0.3	2	23	614	636	613	636	0.96
14	27	0.00076	0.085	13.7	3.9	1	21	664	684	664	685	0.95
15	27	0.0022	0.25	12.3	1.8	2	23	699	720	698	721	0.93
16	27	0.3	33	5.6	1.1	1	23	724	747	724	747	0.94
17	27	0.01	1.1	10.2	1.1	2	23	754	777	753	777	0.90
18	27	2.5	2.9e+02	2.6	0.2	2	23	785	807	785	807	0.94
19	27	0.53	60	4.8	0.0	2	23	814	836	813	836	0.93
20	27	0.19	21	6.2	2.7	2	23	845	867	845	867	0.96
21	27	0.4	46	5.1	0.1	2	23	873	895	872	895	0.92
22	27	0.01	1.2	10.2	0.1	1	23	957	980	957	980	0.95
23	27	0.0011	0.13	13.2	0.9	1	22	1003	1024	1003	1024	0.95
24	27	0.26	30	5.7	1.9	2	23	1124	1146	1123	1146	0.94
25	27	0.54	61	4.8	0.5	2	23	1153	1175	1152	1175	0.94
26	27	0.57	65	4.7	2.5	1	23	1186	1208	1186	1208	0.97
27	27	0.057	6.4	7.8	0.1	1	19	1212	1230	1212	1232	0.95

Sequence Information

Coding Sequence: ATGGTGTTCACGGACTTCGCCGTTTTTAACGCGCATCGTCAAATCTGCATGGAAGAGCAGCGTACGGATCTCCTGGATCAGACTGAGGCGCAGACCAATAAGAATTTAGTTGATATATCCGACGCTTCGAGCGTGGACTCGGACGATGAGAACAAAGACTTTAAGAATGCCGAAGCTAAACTGGCGAAAAATCCTCAATTGACTATATTGAAACACGCCTTGACCAAAGGAGACAGTTTGAAACGTAATCACGACGACGCCGGTTCCGCATCCATTTGCAAACTCAGGAAAATCACCAAAACAGATGATAGCGACATTAATTCTCAGAAGAGATGGTATTGCGAAGTTTGTCCGCAAAGTTTTACGTCGATAGACAATTTGAAAGAGCACGAGAGTATACACGACGCCGAGAAGCCTTTTATTTGCTTGCTATGTAAGAAGGACTTCGGCGTTAAGACGTCGTTAATAAAGCACATTATGCAAGTGCACGGTGTAGATCCCACTCCGATCGTCAACAGTAACAAATGTCTGAAAGCGTTGTCTCTGGATTGGAACAATCAGATAGACGTCGGTCTTTATGAACACACCGAGACGAAGGAGGAACCACCGAACTCGTCATCGCCTGAGATGATTATGGAAAACGAGGAAAAAGACTTGAAAGCTGATCCGGAAAACGAGTCGGTGGAAATTGAAACAGTATTTATATGCGAGCTTTGCGCGAGAGATTTCAACGACCGAGCGTCGTTATGGTACAGCTGCACGATATGCGGTAGACAGCATGACTCGAGGAAAAAGCTTATCGCTCATGTTTCTATACATAATCTCGATCCTACATATGATCCCGCACATTTTGTACGATTAAATAGCATTTATTGTAACGACAACCTAAACGGCAATGAGGGAAACGAACAGGATTTCGATGGGGATGACAGCGAAAAGGTTGATTGTTACATTTGTTACAAATCGTTTCCGAATGAGGATCACCTTATACGACATCAGAGAAACGCTCACAAGCCTGAACAATTGGTTCCATTAGGAGACGCTCAGAGTGTCAATGGCAACAGTAATAGAGCACAGTATCATTTATTCTTTGTGTGCGAGGTGTGCGGCAGTTCTCACTCGAGCAAATGGGAACGTTGGTTACATATCAGTAGCAAACATAGCAACGAACCTTCCATTAAATGTGAATATGAGAATTGTGAGATGCTATTTGCCACGAAATCGTTGCGGAACGATCATATCCAGCATCATGTGATTCAGGGTCCGATACCGAATACGTGCGAGGTGTGCGGTAAGCTTTGGCCTACCCGCGTCGATTATTGGAAACATATGATGGGCGTGCACACGGCCACGGTGCCTTTTATATGCGGCGTTTGTCTGAAAGTAGTTGCCAATGTGTTGAAGTTGCAGGCGCACGTAAGGGCGAAACATTGGCCGTTGACCAATGGTGATTTTAGCTGTGATATTTGCGGTAGACCGTATTCCAATAAATCGAAGATGTCGCGGCACAGAAAGATTCACGGCCTAGAGGCGGCTTTGGCTGCGGCAGCTGCGACCGCAACAGGGGAAGGGGACGTCGTGTGCGACAACAGCAGCTTCAATGAGGCGACCAACGAATCAATGATGATCAAGCTCGAGCAAAACAACGGCGCCGCTGCGGAGGTCGAATTGAATTGCGAGCAATGTCCCGATCTGAGCTTCTCGTCCTTGGAAAGTTTGTGCAACCACCGGCGGTTGGTACACGGCCTTTTCCCGTGCGATCTGTGTGTCAAGTTCTACGGCAGAACATCGCATTTGTGGAAGCACGTGAACAGAGTGCACAAGGGTCACGCGGACGTAACTTGTCCGTATTGTTCGAAAACCAGCGCGTCGAGGGATCATCTGGCCGCGCATATCGCGAAGAATCACAGATACGTGCCCGCGATCGGCAAGGACAGTCAGAACTGCGTCGCTTCCAAGTCCCTGCAGAACGTGGAAGACGGCGTCCAGCATTACTGCGAGAAATGCAACAAGGGATTCCACAAACGTTATCTTTTGCGACGTCACATGAAGGGTTGTCAGAACTATCGCAAGGATCCGGGCGCGTTGCTGACTCGTTGCAGAGCATGCGAGAGAATATTCAAAGATCGCGCGAGTCTGCAGAAGCACATCGAGAATCATCACACCACGTACACGTGTCACTTGTGCAACGAAACAATCACATCCAAACTGGGCATTATGACGCACAACCGCGTCAATCACATGGACCATCCGGATCTCACGTGCAGCCAACCGAGCTGCAAAAAACTCTTCCGCACGAAGGAGGATCTAGAGTCCCATAGGAAGGACCATAAATATCACAGCAATCCGAACGTGTGCGATTTTTGTGGCGACACCGTTGAGAACAAGCTGAAGTTGAAAATGCACGTGCTTTCGTTACATCGAAATGAGATCGGTGTATCTTGCGGTGTCTGTCTCATTCCAATGAAAGATCCGAAAGATTTGAAGAAACACGTTGAAACGGAGCACAGCAGCGTTCTTACCAAACCAAATACGTGTCAAGTATGCGGCAAGCAGTACGCGTCCAAGTGGAAGGCCTTTGATCACACCAAGAAGTGTCACGGAAAAGTTTTCCTCACGTGCAAGCAATGTCTGGCGGTCTTCACGGACGAGAATGACATACGCGATCACTACGAATACGTGCACAACGTTCCGAAGGATCAGCTGTCCATTTTTGAATACAAAATGGACGTCGGTGCAAAGAGAGAGGGTCACGAAACACCCGACATCGTCGTGAAGGAAGAACCGGACGATTTGGAGTTCGACGAGGAGATATGCGACGAGAGCTCGAACGATTCGCGCAAACGGAAGCGAAACCCGAACGATACTTACGACTGCGAGATGTGTCCGGAGATATTCCTGAACCAAGACACTCTCGCTAAGCATTACCAGAATGTTCACAACACCGATCCCGTTCGCATGTTTAAAAAGTTCAAGGACGACAAACGCAAGAGAAATAGGAACAACTTCGAGTGCAAGAATTGCAAAAGGCAGTTTCCGACGAAGACTCTATTCTGGAATCACATAAGCACGTGCGTGCCGCGAAATTCAATGCGCAGATACGATTTCGCGAACAACGTATCGACGTCGATTTTGGAGTCTCATTTGAAGAACAACAATCAGATTCAGCGGGAGGAACTGATGCCGCTGACCAACGAGTCCAATCTGAATATTCCCGACTTCAATTTGTTCGAGGACATCAATATGCAATTGTCGGCACAGAAGCCCGTGCCGAATCTCATGCCGTTGTCGCACATGAAAACCGGGAACGGAAAATGTTCGAGGAAGGATTCGCGCAAGGTGTACGACGAATCGACTAATACCACGTGCACGTGCGAAGTATGCGGCAAGCAGTGGCCCGCTAAGAAGCACTTGTGGCAACACTTGATACGTTTTCATCGCGCCGAAGCCGCGGTGACGTGCGGCGTATGTCTGAAGCTGTGTAAGTCGTACGAAGATCTGTCTGATCATCTGAAGGCCGAGCACGCCCCAGTTTTGTCGCCGGAGGGTAACAACTTTACCTGCAAAACGTGCGGCAGATATCACAACGCGAGGAGCAAATTGCTGTTGCACATGAGCATTCATATCGGGAACTTCCGATGTCAAAAGTGTCAGCAGGGCTTCGCGAGTGAGGAGAAGCTCAGTGAACACGCGGTGCTCGGCTGCAGCGGCAGGTCGGAGTGCGAGGATCAAGCAATGACCGCGGATGAGGACAACACAAAGAACGACAATGACGAAAAGGGTAGTTTGATTGCCGACGAGACATCGGCCATCGAAGAAGCGGAAGAAGAAGCGGAAGACTTCGAATCGGAGGGCGTCGAAAGCAGGGACATAAACGACGAAGAGGACAGCAACAGCGAGGAGGACAACTCGGAAAATAGCGACTCTGATAGCGCTAGTAGCAGTTCGAGCGACGACGAGGAAGAAGAGAAAGATGAACAGGAAGAGGAAGAAGCGGAGGAAGCGGAGGAGGCGGAAGCGGGAGAGGAAGACGATGAAGACAATGAGAACGAGTCCGGGACGAGGACCACAAGCAGAGCGAGCGACAACAGTGTATCGTGTTCTTCCGAGAGCGAAGATTCCGACATGGATGAAGCAGAAGTGCGTACCGTGCAAAAAGAAGCGTCCCAAGTGAGCAACATGTTCGAGATACGTGACGACGGTATTCAAGAGAATTTGACAAATGCTGAAGATCAGAAAACCGATCTCGCGTCTGTCGGGCGAACAGACGCGGAACAGACGAGATCAAGTGACGCGAATAATCTATTAGTTTCTAACGAACCTATGAACGTAGATAAATTTGAGACGTTGCATCTTGAAAAGTCGCCTGCTAAAGCTGCGACAAGCGACGTAGACTTGTCTGACGATAACGAGGATGACAAGGAGGAAGAAAACAACGAAAACGACAAAGAAGAAGAAGAAGAAGGTGAAGATGAGGCCGAGAGCGAGGATGAGACCGAAGCGGAAGAAGAGGAAGACGAAGAGGAGGAGGAGAGGGAGGAGGAGGATGACGACGGGCCGCCAGTGCTGAGTCCGATAATGCCCTTGTTGCAAGAAAACGAAGCCGAAGAGCATAGCAACATAGATCGACACAAGCTTAGTCCGATGGTCTCTCTCAACATGCATAAAGATTTGGAAGAATGCGAGATAACCGAAGTACAAAACAGCGCGGAGAACGCGGACCCGTCGTCGAACGCGGCCACCTTCTACGCGGCGAACAACAACGATCTGTCCGTAACCTGGCACTCGGACTCGGACGACAACGGCGAACGCGATTGCGACTCGGACATCGGAGACAAGGATGTGATAGTGGTGAACAATCAGTTCGACAAGGCGTACGAGAAAATGGAGGTTGACGAGGACGAGAACTTCGAGGAGGATTCCATGGATGAGAACACGATGGACGACGGAGCTGACGAGCAACAGATGCACGAGATACACAATCTCGACGGGACCGTGTTGATGGTAGCGAATGACGCGGAGGGTAATCAGATATTGATAGAGCAGAACGTGTTGGATATCGAGAATGAGGATTCTAACGCCGAAATGACGCAGTACATTTACCCGGAGAACGCTTATGAGATTGTGGAGGAGGATTACGGAACGCGCAACGAAACCGAGGATATGCAAACGGACGAGATGGGCGGTGATGTGACTTACGTTCATAACACATCGGAGAACGAGGAGGACAGCATGGAGGCCGGAGATATCGAGGAGAACAGTGACGACATACAAAAATAG
Protein Sequence: MVFTDFAVFNAHRQICMEEQRTDLLDQTEAQTNKNLVDISDASSVDSDDENKDFKNAEAKLAKNPQLTILKHALTKGDSLKRNHDDAGSASICKLRKITKTDDSDINSQKRWYCEVCPQSFTSIDNLKEHESIHDAEKPFICLLCKKDFGVKTSLIKHIMQVHGVDPTPIVNSNKCLKALSLDWNNQIDVGLYEHTETKEEPPNSSSPEMIMENEEKDLKADPENESVEIETVFICELCARDFNDRASLWYSCTICGRQHDSRKKLIAHVSIHNLDPTYDPAHFVRLNSIYCNDNLNGNEGNEQDFDGDDSEKVDCYICYKSFPNEDHLIRHQRNAHKPEQLVPLGDAQSVNGNSNRAQYHLFFVCEVCGSSHSSKWERWLHISSKHSNEPSIKCEYENCEMLFATKSLRNDHIQHHVIQGPIPNTCEVCGKLWPTRVDYWKHMMGVHTATVPFICGVCLKVVANVLKLQAHVRAKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEAALAAAAATATGEGDVVCDNSSFNEATNESMMIKLEQNNGAAAEVELNCEQCPDLSFSSLESLCNHRRLVHGLFPCDLCVKFYGRTSHLWKHVNRVHKGHADVTCPYCSKTSASRDHLAAHIAKNHRYVPAIGKDSQNCVASKSLQNVEDGVQHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCSQPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVETEHSSVLTKPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEYVHNVPKDQLSIFEYKMDVGAKREGHETPDIVVKEEPDDLEFDEEICDESSNDSRKRKRNPNDTYDCEMCPEIFLNQDTLAKHYQNVHNTDPVRMFKKFKDDKRKRNRNNFECKNCKRQFPTKTLFWNHISTCVPRNSMRRYDFANNVSTSILESHLKNNNQIQREELMPLTNESNLNIPDFNLFEDINMQLSAQKPVPNLMPLSHMKTGNGKCSRKDSRKVYDESTNTTCTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYEDLSDHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASEEKLSEHAVLGCSGRSECEDQAMTADEDNTKNDNDEKGSLIADETSAIEEAEEEAEDFESEGVESRDINDEEDSNSEEDNSENSDSDSASSSSSDDEEEEKDEQEEEEAEEAEEAEAGEEDDEDNENESGTRTTSRASDNSVSCSSESEDSDMDEAEVRTVQKEASQVSNMFEIRDDGIQENLTNAEDQKTDLASVGRTDAEQTRSSDANNLLVSNEPMNVDKFETLHLEKSPAKAATSDVDLSDDNEDDKEEENNENDKEEEEEGEDEAESEDETEAEEEEDEEEEEREEEDDDGPPVLSPIMPLLQENEAEEHSNIDRHKLSPMVSLNMHKDLEECEITEVQNSAENADPSSNAATFYAANNNDLSVTWHSDSDDNGERDCDSDIGDKDVIVVNNQFDKAYEKMEVDEDENFEEDSMDENTMDDGADEQQMHEIHNLDGTVLMVANDAEGNQILIEQNVLDIENEDSNAEMTQYIYPENAYEIVEEDYGTRNETEDMQTDEMGGDVTYVHNTSENEEDSMEAGDIEENSDDIQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01271393;
90% Identity: iTF_01271393;
80% Identity: -