Ppal019001.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- -
- Assembly
- GCA_014825455.1
- Location
- QVNV01019627.1:42895-47542[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.5 1.5e+02 3.4 2.3 1 23 409 431 409 431 0.93 2 19 0.16 15 6.5 0.8 2 23 464 485 463 485 0.96 3 19 0.0098 0.95 10.3 0.3 1 23 557 580 557 580 0.94 4 19 0.001 0.1 13.4 0.9 1 23 583 605 583 605 0.97 5 19 0.0023 0.22 12.3 0.3 2 23 658 680 657 680 0.96 6 19 0.00032 0.031 15.0 0.9 1 23 686 708 686 708 0.97 7 19 0.00016 0.016 15.9 0.9 1 21 716 736 716 740 0.92 8 19 0.00015 0.015 16.0 0.7 2 23 814 836 813 836 0.94 9 19 0.00014 0.014 16.1 5.1 1 23 891 913 891 913 0.97 10 19 0.00018 0.017 15.8 0.7 1 20 918 937 918 939 0.94 11 19 0.0017 0.16 12.7 0.5 2 23 950 971 950 971 0.96 12 19 1.4e-05 0.0013 19.3 0.7 2 23 1010 1031 1009 1031 0.97 13 19 2.8e-05 0.0027 18.3 1.6 1 23 1036 1058 1036 1058 0.95 14 19 5.2e-05 0.0051 17.5 1.6 1 23 1064 1086 1064 1086 0.98 15 19 4.9e-06 0.00048 20.7 0.4 1 23 1102 1124 1102 1124 0.95 16 19 4e-07 3.9e-05 24.1 0.6 1 23 1130 1152 1130 1152 0.99 17 19 4.3e-05 0.0042 17.7 0.2 1 23 1158 1180 1158 1180 0.97 18 19 0.026 2.5 9.0 6.9 1 23 1186 1208 1186 1208 0.96 19 19 0.0088 0.85 10.5 0.7 1 19 1214 1232 1214 1234 0.91
Sequence Information
- Coding Sequence
- ATGGACGCCGTCGAAGTAAATACATCAAATCCACCGCAGGCAAAGGACGCGTCTGCGATGAAGCTGTGTCGCGTGTGTTTGATCGACAATCTGATGACGCGCGATCTCTTTTTCGAGGGCGACGTCGCGTCTCTGTCGACGAAGGCGATGAGTTTCGCCAACGTTAAGATATTACCAGGTGACGGTCTCCCAGCACAGGTTTGTTGTGTATGTGCAGAAAAGTTGGAGTCTGCATATGAGTTTAAGTTACAAGTGGAACAAGCCGACAGTGTTCTCAGAGAAAAATTGATAGGAGGTATAATGAAAGAGGAATTATTTCTCAATGAGGTCGAGATACACTTGGATCCTGAAAGATCGGATGATTTAGAAGGGATAACTACCGGTGCCGATTACGAGCACGCTACTACAGTTTTAACAGAAGAAGAATCGGACACAGATCGAAATTTTATAAAAGACAATTTAATTATCTTGCAAACCGAAAAATTATCAGAGGGACTGTCACAAGATGCAGCAGAACAAGATGATTCGCAAAAGATCATGCAGGAAGTTAACCGACGTACAGAAGAGTTGCAGCAAGAATTAACTGATATAGAGGCTAGTAATATATCAAGTAATATCAAGGAATCGTTGAATGAAAATACTTCTGTGGTTGAAAACGCTTCAGACTGTGCAGATATGATCCCAGAGGAACATGATTATGTACAACAGTGTGTGTTATCCACCGAACAACAACTTCCTCTCGTGCAAGAGAAAACAGAGATAAGTGAGTCAGAAGATGAAAGGTACAAAGTGGACTGTCAAGAAATGTCGTTTGAGCAGAATCAAGAAGAAAACCAGATTCAGCCTGAGGAGAACCAAGAAATTCACGAGATTCAAAACAATCAAATCGAGCCCAATGAAAATAGCGAAGTCATGTCTTTCATAGAGGAATCTCTAGTGGAAGCAATTTCCACAGAAAAATCTCGTAAGGAAGAATCTTTGAAATCTCCCAAAGAAGAATGTTCCAAGATAGAACTCTCCTTGACAGAAGAGATAACACAGACCGACACCAATGAATCAGCCGTGCAAGATTCATTTCATAATGAAACCAGAAGAAGTAAGCGCAGGTTGGCTCGCCGAACGTTTGCCGAACGGGACTCGGATGAGGAGAACTACTTCGAAAACCTGAATCTTAGTTCCCGACTCAAAAGAGCGAAAACAACAGATAAAGCGGAGAAGATCGTCTTCTTGTGTTACTTGTGCGACAAAGAGTTTTTGTCAAAGAACATTTTGAAGGAACACATGCATTCTCACGAGGAAGTGAGAAAAACTTTGTCGCTGAAGACGCCGGAGAAGGTGCAACCCAATGTCTCCCCCACGAAGACGCCAGCATCCGGAAAGAAAGCCAACAAGTGTCCTTATTGCAGTAAAGAATATCTTTACATAATCTCGTTTACCAAGCACATTAAGCAGCACGAACGAGAACGGGAAGAGACGAAGGACGAATCGATGCCGCTTGAGGTGTCGGTCCACGAGGACGAGAACAGTCTGGACTTCGATAACGCCAACAATTCATCGGACAGGGAATGCAGAAAACGACCGAGAAGAGGAAACACGGACGACGGATACAACGACGACACGAGCGAGGACGACCAGGAAAAGAGAAGAAAGCGAAGCCGCGTTGAGGAATTTACGTGCGACAAATGTCCGGAAAAATACAGTGCGAAGCAAGAATTGGACAAGCATGTGCTCGAGACGCACGTTAGCTACAAGTGCAACGAGTGCAAGGAGGAATACGATACTCTGAAGGAACTGCGGGATCATCGAGGCAAGCATGTGATGGAGGGTGTGCTTACTGAACAGGATTTAGAGGAAGATATGAAACAAATGACGACCAAGAGCGTCGAGGACAATGATGAGTGCAACGCGGACGAGGAGAAGGAAACCGAGGATCAGAAAAATGACGAAACCGTGAAAAATACAAAAGAACTGAAGTGTCCCAAATGTCCAATGTTATTCGCGCGCAAGAAAATACTGGCCAGACATATGGAGACGTCGCATTCCGTAACCGGCAAGTACGAGTGCAAGCTGTGCATGCAAAAGTTTTCGCGAAAGGATCTTCTTCGCTGGCACATCGAACAGCATGCGCGATCAGCACGCGGAACCTTCAAATGTACTCAGTGTAACAAGATGTTCAGCAACGAGCTCACTCTGAGGAACCACCTGATCGCCACGAGTCACAAAACGTTCCTGCACGGTCAAGAATACGACACGAACAAGCGTATAAAACGCGTGGCTGCGAGGGCTGCTCAGAAGATCATCGACAAGATCAAGACGGAGGACGGCTTGGAGGATTATGACTCTAATAACGATAATATCGAGTACGATGCCAAGCTGGAGAGACATTATCATCGTAAAGGTGACGCGTCGCCGAAGAAATACAATTATAAAAAAGATTTGGAGTGCGCGACGTGTAACAAGAGGTACAGTTCGAAGCAGGCTCTGATGAAGCACATGGAACAACAGCACGTGAAAAACGAGAAGGCGACGGAACAAGTAACGGAAAAAGCAGCTGATAAGTCGAAAAAGACTACGCCAGAGAAGAAAGAGACGCAGAATTTGACGAGCGATAACGGCGACGACGACAACGATTCCGACTTCGAGAGCGGTTTGGAGTGGCCGATGGACAGTCACGAGTGCACCACGTGCAAGAAACGTTACAGCACGAAAAAGTCGTTGATGCGGCACCAATTGCTACACGAAGAGCCGAACTTTGAGTGCGACATCTGCAATATCAAGTTCTATCGCAAAGACAAACTGAAGGCGCACTACGACAAGTGCTCGGAAAAGAATCCCGATCAGGTAAGAAAGTGCAATATCTGCGGCGACAGCTTCGAAAATAACGAGTTGCTGCGTGAGCATAGAACGAATCACGTGACCGAGGGTATCCTGACGGAAGAGGATTTGAGAGACATCGAGCCGAAACCCGAAGAGAAGAAACCGGGCGAAAAGGTTGGCCGTAAGAGGAGGACCGATATCGTCGGTCTCGAGTGTACCGAGTGCAATAAACGATACACCTCCAGAAAGGGTTTACTGCGGCATATTCAAGTGCACGAGGGCAAGAAGTACCTGTGCGACATATGCCCGAAGAAGTTTTACCGGCGAGAACATCTGAAGATTCATGTGGCCAAGCACAACATGGTCAAGCCGTACAAGTGTCCACGCTGCACCAAGCGCTTTATCAAGGAAGACCAGCTCAACACTCATGTGTCGAAGCACGATCGCACTTTCAAGAAGAACAAAGAACCCGACAGTACCAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAATCGACAACGCTGATTGCGCATCTGCGCGCCCACAAGGGCATCAAACCGTACGTGTGCGAAGTGTGTTCCAGACCGTTCACCACCAACGCCTATTTGAAAATGCATATGCGCACGCACACGCAGGAACGGCCGTACATATGCCAATATTGTTCGCGAGCTTTTGCACGAGCAGACACTTTGGCGAATCACTTGACCTCGCACACCGGCGAGGCCAAGTATCACTGCAAGTGTTGCCCGAAGAACTTCCGGCGACTGAAGTCGCTGAAGGAACACATGTTTATTCACACAGGCCAGCGACCCTACGAATGTCCGACGTGTGACAGAAAGTTCAACAATAATGGTAGTCGTTACGCTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAATCGGTCAGATTGCACCAAACTACGATCGGTCAGGCGCAATTGGTCAAGGCGCAGAACATCAAGACGATTGCGATAACGAGAACAGCCGATACCGGTACGACGCAACAGGTGATGCAGCATCAGGAGATATTGATGCCCCTGATTTTGCCACTCACCGTCACACTCGCTGACGTTGGTGAAGAAGTGATACTACCCGAAGGTACAAAGATCTTCACCACTTCCTAA
- Protein Sequence
- MDAVEVNTSNPPQAKDASAMKLCRVCLIDNLMTRDLFFEGDVASLSTKAMSFANVKILPGDGLPAQVCCVCAEKLESAYEFKLQVEQADSVLREKLIGGIMKEELFLNEVEIHLDPERSDDLEGITTGADYEHATTVLTEEESDTDRNFIKDNLIILQTEKLSEGLSQDAAEQDDSQKIMQEVNRRTEELQQELTDIEASNISSNIKESLNENTSVVENASDCADMIPEEHDYVQQCVLSTEQQLPLVQEKTEISESEDERYKVDCQEMSFEQNQEENQIQPEENQEIHEIQNNQIEPNENSEVMSFIEESLVEAISTEKSRKEESLKSPKEECSKIELSLTEEITQTDTNESAVQDSFHNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKRAKTTDKAEKIVFLCYLCDKEFLSKNILKEHMHSHEEVRKTLSLKTPEKVQPNVSPTKTPASGKKANKCPYCSKEYLYIISFTKHIKQHEREREETKDESMPLEVSVHEDENSLDFDNANNSSDRECRKRPRRGNTDDGYNDDTSEDDQEKRRKRSRVEEFTCDKCPEKYSAKQELDKHVLETHVSYKCNECKEEYDTLKELRDHRGKHVMEGVLTEQDLEEDMKQMTTKSVEDNDECNADEEKETEDQKNDETVKNTKELKCPKCPMLFARKKILARHMETSHSVTGKYECKLCMQKFSRKDLLRWHIEQHARSARGTFKCTQCNKMFSNELTLRNHLIATSHKTFLHGQEYDTNKRIKRVAARAAQKIIDKIKTEDGLEDYDSNNDNIEYDAKLERHYHRKGDASPKKYNYKKDLECATCNKRYSSKQALMKHMEQQHVKNEKATEQVTEKAADKSKKTTPEKKETQNLTSDNGDDDNDSDFESGLEWPMDSHECTTCKKRYSTKKSLMRHQLLHEEPNFECDICNIKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNELLREHRTNHVTEGILTEEDLRDIEPKPEEKKPGEKVGRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCPRCTKRFIKEDQLNTHVSKHDRTFKKNKEPDSTKRFLCEICSKSFTQSTTLIAHLRAHKGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVRLHQTTIGQAQLVKAQNIKTIAITRTADTGTTQQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268439;
- 90% Identity
- iTF_01268439; iTF_01269960; iTF_01267723; iTF_01269211; iTF_01270672;
- 80% Identity
- -