Pfla017116.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- -
- Assembly
- GCA_014825475.1
- Location
- QVNW01001552.1:32939-37575[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.51 54 4.9 2.5 1 23 409 431 409 431 0.96 2 19 0.017 1.8 9.6 0.5 2 23 464 485 463 485 0.96 3 19 0.0022 0.23 12.4 0.4 1 23 557 580 557 580 0.94 4 19 0.001 0.11 13.4 0.9 1 23 583 605 583 605 0.97 5 19 0.0085 0.91 10.5 0.2 2 23 660 682 659 682 0.96 6 19 0.00031 0.033 15.0 0.9 1 23 688 710 688 710 0.97 7 19 0.00016 0.017 16.0 0.9 1 21 718 738 718 742 0.92 8 19 0.00015 0.016 16.0 0.7 2 23 816 838 815 838 0.94 9 19 0.00014 0.015 16.1 5.1 1 23 893 915 893 915 0.97 10 19 0.00018 0.019 15.8 0.7 1 20 920 939 920 941 0.94 11 19 0.0017 0.18 12.7 0.5 2 23 952 973 952 973 0.96 12 19 3e-05 0.0032 18.2 0.6 2 23 1012 1033 1011 1033 0.97 13 19 2.7e-05 0.0029 18.4 1.6 1 23 1038 1060 1038 1060 0.95 14 19 3.1e-05 0.0033 18.2 1.9 1 23 1066 1088 1066 1088 0.98 15 19 4.8e-06 0.00051 20.7 0.4 1 23 1104 1126 1104 1126 0.95 16 19 3.9e-07 4.2e-05 24.1 0.6 1 23 1132 1154 1132 1154 0.99 17 19 4.2e-05 0.0045 17.7 0.2 1 23 1160 1182 1160 1182 0.97 18 19 0.025 2.7 9.0 6.9 1 23 1188 1210 1188 1210 0.96 19 19 0.0086 0.92 10.5 0.7 1 19 1216 1234 1216 1236 0.91
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAAGTAAATACATCAGATCCACCGCAGGCAAAGGACGCGTCTCCGATGAAGCTGTGTCGCGTGTGTCTGATCGACAATCTGATGACGCGCGATCTCTTTTTCGAGAGCGACGTCGCGTCTCTGTCGACGAAGGCGATGAGTTTCGCCAACGTTAAGATATTACCAGGTGACGGTCTCCCAGCACAAGTTTGTTGTGTATGTGCAGAAAAGTTGGAGTCTGCATATGAGTTTAAGTTACAAGTGGAACAAGCCGACAGTGTTCTTAGGGAGAAATTGATAGGAGGTATAATGAAAGAGGAATTATTTCTCAATGAAGTAGAGATACACTTGGATCCTGAAAGATCGGATGATTTAGAAGAGATAAGTACCGGTGTCGATTACGAGCACGTTACCACAGTTTTAACAGAAGAAGAATCGGACACAGATCGGAATTTTATAAAAGACGATTTAATTATCTTGGAAACCGAAAAATTATCGGAGGGACTGTCACAAGATGCAGCAGAACAAGATGATTCGCAAAAGATCATGCAGGAACTTAATCGACGTACAGAAGAGTTGCAGCAAGAATTAACTGACATAGAAGCTAGTAATATATCAAGTAATATCAAGGAATCGTTGAATCAAAATCCTTCTGTGATTGAAAACGTCACTTCAGACTGTGCGGATATGATCCCAACAGAAGAACATGATTATGTACAACAGTGTGTGTTATCCACCGAACAACTTCCTCCCGTGCAAGAGAAAACGGAGATAAATGAGTCAGAAGATGAAAAGTACAAAGTGGACTGTCAAGAAATGTCATTTGATCAGAATCAAGAAGAAAACCAGATTCAGCCTGAGGAGAACCAAGAAATTCAAGAGGTTCAAAACAATCAAATCGAACACAATGAAAATAGCGAAGTCATGTCTTTCATAGAGGAATCTCTAGTGGAAGCAATTTCCACAGAAGAATCTTATAAGGAAGAATCTTCGAAATCTTCCAAAGAAGAATGCTCCAAGGTAGAATCCTTGACAGAAGAGATAACACAGACCGACACTAATGAATCAGCCGTGCAAGCTTCACCTCAGAATGAAACCAGAAGAAGTAAGCGCAGGTTGGCTCGCCGAACGTTTGCCGAACGGGACTCGGATGAGGAGAACTACTTCGAAAACTTGAATCTTAGTTCCCGACTCAAAAGAGCGAAAACAACAGATAAGGCGGAGAAGATCGTCTTCATGTGTTACTTGTGCGACAAAGAGTTTTTGTCAAAGAACATTTTGAAGGAACACATGCATTCTCATGAGGAAGTGAGAAAAACTTTGTCGCTGAAGACGCCGGAGAAGGTGCAACCTAATGTCTCCCCCGCGAAGACGCCGGCATCCGGAAAGAAAGCCAACAAGTGTCCTTATTGCGGTAAAGAATATCTTTACATAATCTCGTTTACCAAGCACATTAAGCAGCACGAACGAGAACGGGAAGAGACGAAGGACAACTCGATGCCGCTTGAGGTATCGGTTCACGAGGACGAGAACAGTCTGGACTTCGATAACGCCAACAATTCATCAGACAGAGAATGCAGAAAACGACCGAGAAGAGGAAACACGGACGACGGATACAACGACGACACGAGCGACGACGACCAGGAAAAGAGAAGAAAGCGAAACCGCGTTGAGGAATTTACGTGCGACAAATGTCCGGAAAAATTCAGTGCAAAGCAAGAATTGGACAAACATGTGCTCGAGACGCACGTTAGCTACAAGTGCAACGAGTGCAAGGAGGAATACGATACTTTGAAGGAACTGCGGGATCATCGAGGCAAGCATGTGATGGAGGGTGTGCTCACTGAACAGGATTTAGAGCAAGATATGAAACAAATGACGACCAAAGGCGTCGAGGACAACGACGAGGGCAACGCGGACGAGGAGATTGACAAGGAAACTGAGGATCAGAAAAATGACGAAACCGTAAAAAACACAAAAGAACTGAAGTGTCCCAAATGTCCAATGTTATTCGCGCGCAAGAAAATACTGGCCAGACATCTGGAGACGTCGCATTCCATAACCGGCAAGTACGAGTGCAAGCTGTGCATGCAAAAGTTTTCGCGAAAGGATCTTCTTCGCTGGCACATCGAACAGCATGCGCGATCAGCACGCGGGACCTTCAAATGTACTCAGTGTAACAAGATGTTCAGCAACGAGCTCACTCTGAGGAACCACCTGATTGCCACGAGCCACAAAACGTTCCTGCACGGTCAAGAATACGACACGAACAAGCGTATAAAACGCGTGGCTGCGAAAGCGGCTCAGAAGATCATCGACAAGATCAAGACGGAGGACGGCTTGGAGGATTACGACTCTAATAACGATAATACCGAGTACGATGCCAAGCTGGAGAGACATTATCATCGTAAAAGTGACGCGTCGCCGAAGAAATACAATTATAAAAAAGATTTGGAGTGCGCGACGTGTAACAAGAGGTACAGTTCGAAGCAGGCTCTGATGAAGCACATGGAACAACAGCACGTGAAAAACGAAAAGATGACGGAACAAGCAACGGAAAAAGCAGCTGATAAGTCGAAAAAGGCCACGCCGGAGAAGAAAGAGACGCAGAATTTGACGAGCGATAACGGCGACGACGACAACGATTCCGACTTCGAGAGCGGTTTGGAGTGGCCGATGGACAGTCACGAGTGCACCACGTGCAAGAAACGTTACAGCACGAAAAAGTCGTTGATGCGACACCAATTGCTACACGAAGAGCCGAACTTTGAGTGCGACATCTGCAATATCAAGTTCTATCGCAAAGACAAACTGAAGGCGCACTACGACAAGTGCTCGGAAAAGAATCCCGATCAGGTAAGAAAGTGCAATATCTGCGGCGACAGCTTCGAAAATAACGAGTTGCTGCGTGAGCATAGAACGAATCACGTGACCGAGGGTATCCTGACGGAAGAGGATTTGAGAGACATCGAGCCGAAACCCGAGGAGAAGAAACCGGGCGAAAAGGTCGGTCGTAAGAGGAGGACCGATATCGTCGGTCTCGAGTGTACCGAATGTAATAAGCAATACACCTCCAGAAAGGGTTTACTGCGGCATATTCAAGTGCACGAGGGCAAGAAGTACCTGTGCGACATATGCCCGAAGAAATTTTACCGGCGAGAACATCTGAAGATTCATGTGGCCAAGCACAACATGGTCAAGCCGTACAAGTGTCCACGCTGCACCAAGCGCTTTATCAAGGAAGACCAGCTCAACACTCATCTGTCCAAGCACGATCGCACTTTCAAGAAGAACAAAGAACCCGACAGTACCAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAATCGACAACGCTGATTGCGCACCTGCGCGCCCACAAGGGTATCAAACCGTACGTGTGCGAAGTGTGTTCCAGACCGTTCACCACCAACGCTTATCTGAAAATGCACATGCGCACGCATACGCAGGAACGGCCGTATATATGCCAATATTGTTCGCGAGCTTTTGCACGAGCAGACACCTTGGCGAATCACTTGACCTCGCACACGGGCGAGGCCAAGTATCACTGCAAGTGTTGCCCGAAGAACTTCCGGCGACTGAAGTCGCTGAAGGAACACATGTTCATTCACACGGGCCAGCGACCCTACGAATGTCCAACATGTGACAGAAAGTTCAACAATAATGGCAGTCGTTACGCTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTCAGATTGCACCAAACTACGATCGGTCAGGCGCAACTGGTCAAGGCGCAGAACATCAAGACGATTGCGATAACAAGAACAGCCGATACCGGTACGACGCAACAGGTGATGCAACATCAGGAGATATTGATGCCTCTGATTTTGCCACTCACCGTCACACTCGCTGACGTTGGTGAAGAAGTGATACTACCCGAAGGTACAAAGATCTTCACCACTTCCTAA
- Protein Sequence
- MDAVEVNTSDPPQAKDASPMKLCRVCLIDNLMTRDLFFESDVASLSTKAMSFANVKILPGDGLPAQVCCVCAEKLESAYEFKLQVEQADSVLREKLIGGIMKEELFLNEVEIHLDPERSDDLEEISTGVDYEHVTTVLTEEESDTDRNFIKDDLIILETEKLSEGLSQDAAEQDDSQKIMQELNRRTEELQQELTDIEASNISSNIKESLNQNPSVIENVTSDCADMIPTEEHDYVQQCVLSTEQLPPVQEKTEINESEDEKYKVDCQEMSFDQNQEENQIQPEENQEIQEVQNNQIEHNENSEVMSFIEESLVEAISTEESYKEESSKSSKEECSKVESLTEEITQTDTNESAVQASPQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKRAKTTDKAEKIVFMCYLCDKEFLSKNILKEHMHSHEEVRKTLSLKTPEKVQPNVSPAKTPASGKKANKCPYCGKEYLYIISFTKHIKQHEREREETKDNSMPLEVSVHEDENSLDFDNANNSSDRECRKRPRRGNTDDGYNDDTSDDDQEKRRKRNRVEEFTCDKCPEKFSAKQELDKHVLETHVSYKCNECKEEYDTLKELRDHRGKHVMEGVLTEQDLEQDMKQMTTKGVEDNDEGNADEEIDKETEDQKNDETVKNTKELKCPKCPMLFARKKILARHLETSHSITGKYECKLCMQKFSRKDLLRWHIEQHARSARGTFKCTQCNKMFSNELTLRNHLIATSHKTFLHGQEYDTNKRIKRVAAKAAQKIIDKIKTEDGLEDYDSNNDNTEYDAKLERHYHRKSDASPKKYNYKKDLECATCNKRYSSKQALMKHMEQQHVKNEKMTEQATEKAADKSKKATPEKKETQNLTSDNGDDDNDSDFESGLEWPMDSHECTTCKKRYSTKKSLMRHQLLHEEPNFECDICNIKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNELLREHRTNHVTEGILTEEDLRDIEPKPEEKKPGEKVGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCPRCTKRFIKEDQLNTHLSKHDRTFKKNKEPDSTKRFLCEICSKSFTQSTTLIAHLRAHKGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVRLHQTTIGQAQLVKAQNIKTIAITRTADTGTTQQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268439;
- 90% Identity
- iTF_01271387;
- 80% Identity
- -