Pcub023582.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- -
- Assembly
- GCA_014825685.1
- Location
- QVOA01020310.1:18168-22808[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.51 55 4.9 2.5 1 23 409 431 409 431 0.96 2 19 0.016 1.8 9.6 0.5 2 23 464 485 463 485 0.96 3 19 0.0021 0.23 12.4 0.4 1 23 557 580 557 580 0.94 4 19 0.001 0.11 13.4 0.9 1 23 583 605 583 605 0.97 5 19 0.024 2.6 9.1 0.5 2 23 659 681 658 681 0.96 6 19 0.00031 0.034 15.0 0.9 1 23 687 709 687 709 0.97 7 19 0.00016 0.017 16.0 0.9 1 21 717 737 717 741 0.92 8 19 0.00015 0.016 16.0 0.7 2 23 815 837 814 837 0.94 9 19 0.00014 0.015 16.1 5.1 1 23 892 914 892 914 0.97 10 19 0.00017 0.019 15.8 0.7 1 20 919 938 919 940 0.94 11 19 0.0016 0.18 12.7 0.5 2 23 951 972 951 972 0.96 12 19 3e-05 0.0032 18.2 0.6 2 23 1011 1032 1010 1032 0.97 13 19 2.7e-05 0.0029 18.4 1.6 1 23 1037 1059 1037 1059 0.95 14 19 3.1e-05 0.0033 18.2 1.9 1 23 1065 1087 1065 1087 0.98 15 19 4.8e-06 0.00052 20.7 0.4 1 23 1103 1125 1103 1125 0.95 16 19 3.9e-07 4.2e-05 24.1 0.6 1 23 1131 1153 1131 1153 0.99 17 19 4.2e-05 0.0046 17.7 0.2 1 23 1159 1181 1159 1181 0.97 18 19 0.025 2.7 9.0 6.9 1 23 1187 1209 1187 1209 0.96 19 19 0.0053 0.57 11.1 0.6 1 20 1215 1234 1215 1236 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAAGTAAATACATCAGATCCACCGCAGGCGAAGGACGAGTCTCCGATGAAGCTGTGTCGCGTGTGTCTGATTGACAATCTGATGACACGCGATCTCTTTTTCGAGGGCGACGTCGCGTCTCTGTCGACGAAGGCGATGAGTTTCGCCAACGTTAAGATATTACCAGGTGACGGTCTCCCAGCACAGGTTTGTTGTGTGTGTGCGGAAAAGTTGGAGTCTGCATATGAGTTTAAGTTACAAGTGGAACAAGCTGACAGTGTTCTTAGGGAGAAATTGATAGGAGGTATAATGAAAGAGGAATTATTCCTCAATGAAGTCGAGATACACTTGGATCCTGAAAGATCGGATGATTTAGAAGAGATAAGTACCGGTGCCGATTACGAGCACGCTACCGCAGTTCTGACAGAAGAAGAATCGGACACAGATCGGAATTTTATGAAAGACGATTTAATTATTTTGGAAACCGAAAAATTATCGGAAGGACTGTCACAAGATGCGGCAGAACAAGATGATTCGCAAAAGATCATGCAGGAAGTTAATCGACGTACAGAAGAGTTGCAGCAAGAATTAACTGACATAGAGGCTAGCAATATATCAAATAATATCAAGGAATCGTTGAATCAAAATTCTTCTGTGGTTGAAAACACAACTTCAGACTGTGCAGATATGATCCCAGCAGAAGAACATGATTATGTACAACAGTGTGTGTTATCCACTGAACAACTTCCTCCTGTGCAAGAGAAAACAGAGATAAATGGGTCGGAAGATGAGAAGTACAAAGTGGAGTGTCAGGAAATGCCGTTTGAGCAGAATCAAGAAGAAAACCAGATTCAGTCTGAGGAGAACCAAGAAATTCAAGAGGTTCAAAACAATCAAATCGAGCACAATGAAAATAGCGAAGTCATGTCTTTCATAGAAGAATCTCTAGCGGAAGCAATTTCCACAGAAGAATCTCGCAAGGAAGAATCTTCGAAATCTTCCAAAGAAGAATGCTCTAAGATGGAATCCTTGACAGAAGAGATGGCACAGACCGACACTAATGAATCAGCTGTGCAAGATTCACCTCAGAATGAAACCAGAAGGAGTAAGCGCAGGTTGGCTCGCCGAACGTTTGCCGAACGGGACTCGGATGAGGAGAACTACTTCGAAAACCTGAATCTTAGTTCCCGACTCAAAAGAGCGAAAACAACAGATAAGGCGGAGAAGATCGTCTTCATGTGTTACTTGTGCGACAAAGAGTTTTTGTCAAAGAACATTTTGAAGGAACACATGCATTCCCATGAGGAAGTGAGAAAAACTTTGTCGCTGAAGACGCCGGAAAAGATGCAACCTAATGTTTCCCCCGCGAAGACGCCAGCATCCGGAAAGAAAGCCAACAAGTGTCCTTATTGCGGTAAAGAATATCTTTACATAATCTCGTTTACCAAGCACATTAAGCAGCACGAGCGAGAACGGGAGGAGACGAAAGACGACTCGATGCCGCTTGAGGTGTCGGTCCACGAGGACGAGAACAGTCTGGACTTCGATAACGCCAACAATTCATCGGACAGAGAATGCAGAAAACGACCGAGAAGAGGAAACACGGACGACGGATACAACGACGACACGAGCGAGGACGACCAGGAAAAGAGAAGAAAGCGAAGCCGCGTTGAGGAATTTACGTGCGACAAATGTCCGGAAAAATTCAGTGCGAAGCAAGAATTGGACAAGCATGTGCTCGAGACGCACGTTAGCTACAAGTGCAACGAGTGCAAGGAGGAATACGATACTCTGAAGGAGCTACGAGATCATCGAGGCAAGCATGTGATAGAAGGTGTGCTCACTGAACAGGATTTAGAGGAAGATATGAAACAAATGACGACCAAGAACGTCGAGGACAACGACGAGGGCAACGCGGACGAAGAGGTTGACAAGGAAACCGAGGATCAGAAAAATGACGAAACCGTGAAAAACACTGAACTGAAGTGTTCCAAGTGTCCAATGTTATTCGCGCGCAAGAAAATACTGGCCAGACATCTGGAGACGTCGCATTCCGTAACCGGCAAGTACGAGTGCAAGCTGTGCATGCAAAAGTTTTCGCGAAAGGATCTTCTTCGCTGGCACATCGAGCAGCATGCGCGATCAGCACGCGGCACCTTCAAGTGTACTCAGTGTAACAAGATGTTCAGCAACGAGCTCACTCTGAGAAACCACCTGATCGCAACGAGCCACAAAACGTTCCTGCACGGTCAAGAATACGACACGAACAAGCGTATAAAACGCGTGGCTGCGAAAGCGGCTCAGAAGATCATCGACAAGATCAAGACGGAGGACGGCTTGGAGGATTACGACTCTAATAACGATAATACGGAGTACGATGCCAAGCTGGAGAGACATTATCATCGTAAAGGCGACGCGTCGCCGAAGAAATACAATTATAAAAAGGATTTGGAGTGCGCGACGTGTAACAAGAGGTACAGTTCGAAGCAGGCTCTGATGAAGCACATGGAACAACAGCACGTGAAAAACGAGAAGGCGACGGAACAAGCAACGGAAAAAGCAACTGATAAATCGAAAAAGGCCACGCCGGAGAAGAAAGAGACGCAGAATTTGACGAGCGATAACGGCGACGACGACAACGATTCCGACTTCGAGAGCGGTTTGGAGTGGCCGATGGACAGTCACGAGTGCACCACGTGCAAGAAACGTTACAGCACGAAAAAGTCGCTGATGCGGCACCAATTGCTACACGAAGAGCCGAACTTTGAGTGCGACATCTGCAATATCAAGTTCTATCGCAAAGACAAACTGAAGGCGCATTACGACAAGTGCTCGGAAAAGAATCCCGATCAGGTGAGAAAGTGCAATATCTGCGGCGACAGCTTCGAAAACAATGAGTTGCTGCGTGAACATAGAACGAATCACGTTACCGAGGGTATCCTGACGGAAGAGGATTTGAGAGACATCGAGCCGAAACCCGAGGAGAAGAAACCGGGCGAAAAGGTCGGCCGTAAGAGAAGGACCGATATCGTCGGTCTCGAGTGTACCGAATGCAATAAACAATACACCTCCAGAAAGGGTTTACTGCGGCATATCCAAGTGCACGAAGGCAAGAAGTACCTGTGCGACATATGCCCGAAGAAGTTTTACCGGCGAGAACATTTGAAGATTCATGTGGCCAAACACAACATGATCAAGCCGTACAAGTGTCCACGGTGCACCAAGCGCTTTATCAAGGAAGACCAGCTCAACACTCATCTGTCGAAGCACGATCGCACTTTCAAGAAGAACAAAGAACCCGACAGTACCAAGAGATTTCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAATCGACAACGCTGATTGCGCATCTGCGCGCCCACAAGGGCATCAAACCGTACGTGTGCGAAGTGTGTTCCAGGCCGTTTACCACCAACGCTTATCTGAAAATGCACATGCGCACGCACACGCAGGAACGACCGTACATATGCCAATATTGTTCGCGAGCTTTCGCACGAGCAGACACGTTGGCGAATCACTTGACCTCGCACACCGGCGAGGCCAAGTATCACTGCAAGTGTTGCCCGAAGAACTTCCGACGATTGAAATCGCTGAAGGAGCACATGTTCATTCATACAGGCCAGCGACCCTATGAATGTCCGACGTGCGACAGAAAGTTTAACAATAATGGCAGTCGTTATGCTCATAGCAAGCGCTGCAAGCAGAATCTTCTTCAGAATCAAAACCGTGCGCAACAAATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGATTGCACCAAACTACGATCGGTCAGGCGCAACTGGTCAAGGCGCAAAACATCAAGACGATTGCGATAACGAGAACGGCCGATACCGGTACGACGCAACAGGTGATGCAACATCAGGAGATATTGATGCCTCTGATTTTGCCACTCACCGTCACACTCGCTGACGTCGGTGAAGAAGTGATACTACCCGAAGGTACAAAGATCTTCACCACTTCCTAA
- Protein Sequence
- MDAVEVNTSDPPQAKDESPMKLCRVCLIDNLMTRDLFFEGDVASLSTKAMSFANVKILPGDGLPAQVCCVCAEKLESAYEFKLQVEQADSVLREKLIGGIMKEELFLNEVEIHLDPERSDDLEEISTGADYEHATAVLTEEESDTDRNFMKDDLIILETEKLSEGLSQDAAEQDDSQKIMQEVNRRTEELQQELTDIEASNISNNIKESLNQNSSVVENTTSDCADMIPAEEHDYVQQCVLSTEQLPPVQEKTEINGSEDEKYKVECQEMPFEQNQEENQIQSEENQEIQEVQNNQIEHNENSEVMSFIEESLAEAISTEESRKEESSKSSKEECSKMESLTEEMAQTDTNESAVQDSPQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKRAKTTDKAEKIVFMCYLCDKEFLSKNILKEHMHSHEEVRKTLSLKTPEKMQPNVSPAKTPASGKKANKCPYCGKEYLYIISFTKHIKQHEREREETKDDSMPLEVSVHEDENSLDFDNANNSSDRECRKRPRRGNTDDGYNDDTSEDDQEKRRKRSRVEEFTCDKCPEKFSAKQELDKHVLETHVSYKCNECKEEYDTLKELRDHRGKHVIEGVLTEQDLEEDMKQMTTKNVEDNDEGNADEEVDKETEDQKNDETVKNTELKCSKCPMLFARKKILARHLETSHSVTGKYECKLCMQKFSRKDLLRWHIEQHARSARGTFKCTQCNKMFSNELTLRNHLIATSHKTFLHGQEYDTNKRIKRVAAKAAQKIIDKIKTEDGLEDYDSNNDNTEYDAKLERHYHRKGDASPKKYNYKKDLECATCNKRYSSKQALMKHMEQQHVKNEKATEQATEKATDKSKKATPEKKETQNLTSDNGDDDNDSDFESGLEWPMDSHECTTCKKRYSTKKSLMRHQLLHEEPNFECDICNIKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNELLREHRTNHVTEGILTEEDLRDIEPKPEEKKPGEKVGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEDQLNTHLSKHDRTFKKNKEPDSTKRFLCEICSKSFTQSTTLIAHLRAHKGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRLHQTTIGQAQLVKAQNIKTIAITRTADTGTTQQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268439;
- 90% Identity
- iTF_01271387;
- 80% Identity
- -