Basic Information

Insect: Pseudomyrmex flavicornis
Gene Symbol: pita
Assembly: GCA_014825475.1
Location: QVNW01000070.1:46234-48795[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0052 0.56 11.2 2.9 1 23 238 261 238 262 0.95

2 11 0.00057 0.061 14.2 1.1 1 23 266 289 266 289 0.94

3 11 0.026 2.8 8.9 3.8 1 23 329 351 329 351 0.97

4 11 5.3e-07 5.6e-05 23.7 1.5 2 23 406 427 405 427 0.97

5 11 5.9e-05 0.0063 17.3 1.3 1 23 432 455 432 455 0.95

6 11 3.4e-05 0.0036 18.1 1.3 1 23 493 515 493 515 0.97

7 11 9.1e-07 9.7e-05 23.0 1.7 1 23 525 547 525 547 0.96

8 11 2.5e-06 0.00026 21.6 1.5 1 23 553 575 553 575 0.99

9 11 1e-05 0.0011 19.7 0.2 1 23 581 603 581 603 0.98

10 11 1.3e-05 0.0014 19.4 4.3 1 23 609 631 609 631 0.98

11 11 0.00047 0.05 14.5 0.4 1 21 637 657 637 658 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0052	0.56	11.2	2.9	1	23	238	261	238	262	0.95
2	11	0.00057	0.061	14.2	1.1	1	23	266	289	266	289	0.94
3	11	0.026	2.8	8.9	3.8	1	23	329	351	329	351	0.97
4	11	5.3e-07	5.6e-05	23.7	1.5	2	23	406	427	405	427	0.97
5	11	5.9e-05	0.0063	17.3	1.3	1	23	432	455	432	455	0.95
6	11	3.4e-05	0.0036	18.1	1.3	1	23	493	515	493	515	0.97
7	11	9.1e-07	9.7e-05	23.0	1.7	1	23	525	547	525	547	0.96
8	11	2.5e-06	0.00026	21.6	1.5	1	23	553	575	553	575	0.99
9	11	1e-05	0.0011	19.7	0.2	1	23	581	603	581	603	0.98
10	11	1.3e-05	0.0014	19.4	4.3	1	23	609	631	609	631	0.98
11	11	0.00047	0.05	14.5	0.4	1	21	637	657	637	658	0.94

Sequence Information

Coding Sequence: ATGGCATTTACAAATGATAGCGTGATGGTGAATAACGTGGTTCACACGGAACAGCTGATGGGCAATGAGTGCCGTATTTGCCTCAAGCCTTGCACAGAGGTGTGTCAGCTCTTCCAAAACAACGATGGAATACCGGAGAAGCTGATGGCCATTGGCGCAGTGCAGGTGCAAGAAGGTGACGGTCTTCCAGCATCCATTTGTCTGTCGTGCAATCATTTGCTTGATGTATCATATGACTTCAAGTGTCAGATTCAGAATTCTGATGTAAAGCTACGTCAGATTCTGAAACTGCCTATGCTGCAGGACAATAATATGAAGGATATCATGGATGCTATGCCTGATGTAAATTTGAAAAAGGACAATGACATAGAAATTTACTCTCATGATCTCATTACTTCCAATAATACTGCAATAATCAATAATGAATCTTCTATAAGTCATGATCAGTCAAATCGCCTATGCTCTTCAATATCAGAAGACAGTTATACCTCTTGTGATAAACAGGAGCATTTAATGTTATCTGAAGATAATAAAACATCAGAAAATTTAACAGACAACAATAGGGAAGTCACAATAAAGGACGATGTTAAGAATGAGATGTCATTGGAAGATAATCAGGATGTTTTGAAGCAATTGTTAGGAATGGATAATCAAGATGTGGAAACTTGTAGCGACGACGAGGAGAAGCCATTAATAAGCAGGACACCTGGATATAAGTGCTCAGATTGTATTAAATCATTTGCGACACATACAGCTTTGATGGAACATGCAAAACTTAAACATCATCCGCATTATTATTTATGTGTTTTATGTGACAAGTATCTATCGGATAAGGCCAAGTTGAAGAAACACATGTTTACTAACCACCGAATGATGGATGATGAGACGTTGCAAGAAAGTAATCAGGATAAAAAGTCCAATAAAGTATCAACAAAAGTTACCAGGAGTGGTACCATAATAGACAACACGAGAGAGAAAAATAAGTACATATGCAATATTTGTTCGAGGGAATTCAAATATCATAAACCTTTTTTATCTCATACCAAAAATCATTCTGCATGCAGTGAGAAAACGTCAGACGATGTATTCGATCAGTCTCAAAACAAGAGGACAAATAAACAGAAAGACAAAATCTCGGTATCCAGGGAAAACAAGTCTGAGGATGAGGACGAAGAGGAAGACGACGACGACAGCGACTTGCCGATCGAGAGTCTACAGTGTACGCAATGCGGCAAGCTTTTTGCCACAAAAAGGAATCTAAAAAGGCACATCTCAACGCACAGTGGCTTAAAATTTAATTGTACGACTTGTGGAAAGGAATTTTCAAGGATCGACAAGTTGAAAGATCACGAGCAATCAAAGCACAAGATGGAAATATTCGGTAACACTGAAGACGAGGATGACGACGATGAAGATAATGAGAACAAAGTCAACGAAAATTCCGAGAGTCGAAAGAAGGATCGTCATAACAGGCCGCATCAGTGCTCGCATTGTCCAAAGGCATTTGCGCAAGCTCAATCTCTGGCAAATCACGAGGAAAGACACAAACGGGCGAAAGATACGCAGAAGCGATTTCTCTGCGAAAAATGTAGCAAATGTTTTGCTCAGAGTGGCTCATTGGTAGCGCATATGCGCACACACACCGGTCATCGGCCATATGTGTGCAAAGTGTGCAGTCGCGCCTTTACCAAGAGCACGTATCTACAACTACACTTACGAACTCACAGTGGCGAGAAACCGTACATTTGCCAGTATTGTAGCAGGGCATTTGCCAGAGCTAATACTTTGGCTCGGCATATTACTATGCACACCGGCGAAGCCAAGTACTGCTGTAACATCTGCGAGAAGAAGTTTCGACGACTAACTTCGCTAAACGAACACATGTACACGCACACTGGTCAACGGCCGTATGCGTGCAAACTTTGCAACAAAAGATATAACAACGCTGGTTCCCTCTATGCTCATACAAAGAAGTGTAAGGCACAGCAGTCGTCTAGCGGGACGACAACTGCATTTACAGTGTCTACAGTGGATACCACGCCGCAGCAGAATGAGGCGTCTATGCCCCAATTGCTAATATATTCTCAGAGAAAATTAGAGGAGGAGCCATCAGTTAATCAAGTTATGCCAACGCCGCAATACTTAGTAGCAAATGTGCACAATCAGAAAACAATGTCCACCAATGTCATCCAATCATTCACTATGGAGGATCCGAATGTTCCGAGTGTGTACAATCCTAAACAGTTCAAGAACTATACTTATATTTATCCAAACATGTAA
Protein Sequence: MAFTNDSVMVNNVVHTEQLMGNECRICLKPCTEVCQLFQNNDGIPEKLMAIGAVQVQEGDGLPASICLSCNHLLDVSYDFKCQIQNSDVKLRQILKLPMLQDNNMKDIMDAMPDVNLKKDNDIEIYSHDLITSNNTAIINNESSISHDQSNRLCSSISEDSYTSCDKQEHLMLSEDNKTSENLTDNNREVTIKDDVKNEMSLEDNQDVLKQLLGMDNQDVETCSDDEEKPLISRTPGYKCSDCIKSFATHTALMEHAKLKHHPHYYLCVLCDKYLSDKAKLKKHMFTNHRMMDDETLQESNQDKKSNKVSTKVTRSGTIIDNTREKNKYICNICSREFKYHKPFLSHTKNHSACSEKTSDDVFDQSQNKRTNKQKDKISVSRENKSEDEDEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCTTCGKEFSRIDKLKDHEQSKHKMEIFGNTEDEDDDDEDNENKVNENSESRKKDRHNRPHQCSHCPKAFAQAQSLANHEERHKRAKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGHRPYVCKVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYCCNICEKKFRRLTSLNEHMYTHTGQRPYACKLCNKRYNNAGSLYAHTKKCKAQQSSSGTTTAFTVSTVDTTPQQNEASMPQLLIYSQRKLEEEPSVNQVMPTPQYLVANVHNQKTMSTNVIQSFTMEDPNVPSVYNPKQFKNYTYIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01271410;
90% Identity: iTF_01270692; iTF_01268458; iTF_01269231; iTF_01271410; iTF_01267032; iTF_01267743;
80% Identity: -