Basic Information

Insect: Pseudomyrmex elongatus
Gene Symbol: pita
Assembly: GCA_014825605.1
Location: QVNY01033607.1:36155-38706[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0058 1.2 11.2 2.9 1 23 237 260 237 261 0.95

2 11 0.00064 0.13 14.2 1.1 1 23 265 288 265 288 0.94

3 11 0.029 6 8.9 3.8 1 23 327 349 327 349 0.97

4 11 5.8e-07 0.00012 23.7 1.5 2 23 404 425 403 425 0.97

5 11 6.5e-05 0.013 17.3 1.3 1 23 430 453 430 453 0.95

6 11 3.7e-05 0.0076 18.1 1.3 1 23 491 513 491 513 0.97

7 11 1e-06 0.00021 23.0 1.7 1 23 523 545 523 545 0.96

8 11 2.7e-06 0.00056 21.6 1.5 1 23 551 573 551 573 0.99

9 11 1.1e-05 0.0024 19.7 0.2 1 23 579 601 579 601 0.98

10 11 1.4e-05 0.0029 19.4 4.3 1 23 607 629 607 629 0.98

11 11 0.00052 0.11 14.5 0.4 1 21 635 655 635 656 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0058	1.2	11.2	2.9	1	23	237	260	237	261	0.95
2	11	0.00064	0.13	14.2	1.1	1	23	265	288	265	288	0.94
3	11	0.029	6	8.9	3.8	1	23	327	349	327	349	0.97
4	11	5.8e-07	0.00012	23.7	1.5	2	23	404	425	403	425	0.97
5	11	6.5e-05	0.013	17.3	1.3	1	23	430	453	430	453	0.95
6	11	3.7e-05	0.0076	18.1	1.3	1	23	491	513	491	513	0.97
7	11	1e-06	0.00021	23.0	1.7	1	23	523	545	523	545	0.96
8	11	2.7e-06	0.00056	21.6	1.5	1	23	551	573	551	573	0.99
9	11	1.1e-05	0.0024	19.7	0.2	1	23	579	601	579	601	0.98
10	11	1.4e-05	0.0029	19.4	4.3	1	23	607	629	607	629	0.98
11	11	0.00052	0.11	14.5	0.4	1	21	635	655	635	656	0.94

Sequence Information

Coding Sequence: ATGGCATTTACAAATGATAGCGTGATGGTGAATAACGTGGTTCACACGGAACAGCTGATGGGTAATGAGTGCCGTATTTGCCTCAAGCCTTGCACAGAGGTGTGTCAGCTCTTCCAAAACAACGGCGGAATACCGGAGAAGCTGATGGCCATTGGCGCAGTGCAGGTGCAAGAAGGTGACGGTCTTCCAGCATCCATTTGTCTGTCGTGCAATCATTTGCTTGATGTATCATATGACTTCAAGTGTCAGATTCAGAATTCTGACGTAAAGCTACGTCAAATTCTGAAACTGCCTATTCTGCAGGACAATAATATGAAGGATATTATGGATGCTATGCCTGATGTAAATTTGAAAAAGGACAATGACATAGAAATTTACTCTCATGATCTCATTACTTCCAATAATACTGCAATAATTAATAATGAATCTCCTATAAGTCATGATCAGTCAAATCGCCTATGTTCTTCAATGTCAGAAGACAGTTATACCTCCTGTGATAAACAGGAGCAATTAATGTTATCTGAAGATAATAAAACATCAGACAATTTAACAGACAACAATAAGGAAGTCACAATAAAGGATGACATTAAGAATGAGATGTCATTGGAAGATAATCAGGATGTTTTGAAGCAACTGTTGGGAATGGATAATCAAGATGTAGAAACTTGTAGTGACGAGGAGAAACCATTAATAAGCAGGACAACTGGATATAAGTGCTCAGATTGTATCAAATCATTTGCGACACATACAGCTTTGATGGAACATGCAAAACTTAAACATCATCCGCACTATTATTTATGTGTTTTATGCGACAAGTATCTCTCAGATAAGGCCAAGTTGAAGAAACACATGTTTACTAACCACCGAATGATGGATGATGAGACGTTGCAAGAAAGTAATCAGGATAAAAAGACCAATAAAGTATCAACAAAAGTTACCAGGAGTGGTACCATAATAGACACGAGAGAAAAAAATAAGTACATATGCAATATTTGTTCGAGGGAATTCAAATATCATAAACCCTTTTTATCTCATACCAAAAATCACTCTGCATGCAGTGAGAAAACGTCAGACGATGTATTCGACCAGTCTCAAAACAAGAGGGCAAATAAACAGAAAGACAAAATCTCGGGATCCAGGGAAAACAAGTCCGAGGATGAAGATGAAGAGGAAGACGACGACGACAGCGACTTGCCAATCGAGAGTCTACAGTGTACGCAATGCGGCAAGCTCTTTGCCACAAAAAGGAACTTAAAAAGGCACATCTCAACGCACAGTGGCTTAAAGTTTAATTGTACAACTTGTGGGAAAGAATTTTCAAGGATTGACAAGTTGAAAGATCACGAGCAATCAAAGCACAAGATGGAAATATTTGGTAACACTGAAGACGAGGATGACGACGATGAGGATAATGAGAACAAAGTCAACGAGAATTCTGAGATTCGAAAGAAGGATCGTCATAACAGACCGCATCAGTGCTCGCATTGTCCAAAGGCATTTGCGCAAGCTCAATCTCTGGCAAATCACGAGGAAAGACACAAACGGGCGAAAGATACGCAGAAACGATTCCTCTGCGAAAAATGTAGCAAATGTTTTGCTCAGAGTGGCTCATTGGTAGCGCATATGCGCACACACACTGGTCATCGGCCATATGTGTGCAAAGTGTGCAGTCGCGCCTTTACCAAGAGCACGTATCTACAACTACATTTACGAACTCACAGTGGCGAGAAACCGTACATTTGCCAGTATTGTAGCAGGGCATTTGCCAGAGCCAATACTTTGGCTCGGCATATTACTATGCACACCGGCGAAGCCAAGTACTGCTGTAACATCTGCGAGAAGAAGTTTCGACGACTAACTTCGCTGAACGAACACATGTACACGCACACTGGTCAACGGCCATATGCGTGCAAACTTTGCAACAAAAGATACAACAACGCTGGTTCCCTCTATGCTCATACAAAGAAGTGTAAGGCGCAGCAGTCGTCTAGCGGGGCGACAACTGCATTTACAGTGTCTACAGTAGATACCACGCCGCAGCAGAATGAGGCGTCTATGCCCCAATTGCTAATATATTCTCAGAGAAAATTAGAAGAGGAGCCATCAGTTAATCAAGTTATGCCAACGCCGCAATACTTGGTAGCAAATGTGCACAATCAGAAAACAATGTCCACCAATGTCATCCAGTCATTCACTATGGAGGATCCGAATGTTCCGAATGTGTACAATCCTAAACAGTTCAAGAACTATACTACTTATATTTATCCAAACATGTAA
Protein Sequence: MAFTNDSVMVNNVVHTEQLMGNECRICLKPCTEVCQLFQNNGGIPEKLMAIGAVQVQEGDGLPASICLSCNHLLDVSYDFKCQIQNSDVKLRQILKLPILQDNNMKDIMDAMPDVNLKKDNDIEIYSHDLITSNNTAIINNESPISHDQSNRLCSSMSEDSYTSCDKQEQLMLSEDNKTSDNLTDNNKEVTIKDDIKNEMSLEDNQDVLKQLLGMDNQDVETCSDEEKPLISRTTGYKCSDCIKSFATHTALMEHAKLKHHPHYYLCVLCDKYLSDKAKLKKHMFTNHRMMDDETLQESNQDKKTNKVSTKVTRSGTIIDTREKNKYICNICSREFKYHKPFLSHTKNHSACSEKTSDDVFDQSQNKRANKQKDKISGSRENKSEDEDEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCTTCGKEFSRIDKLKDHEQSKHKMEIFGNTEDEDDDDEDNENKVNENSEIRKKDRHNRPHQCSHCPKAFAQAQSLANHEERHKRAKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGHRPYVCKVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYCCNICEKKFRRLTSLNEHMYTHTGQRPYACKLCNKRYNNAGSLYAHTKKCKAQQSSSGATTAFTVSTVDTTPQQNEASMPQLLIYSQRKLEEEPSVNQVMPTPQYLVANVHNQKTMSTNVIQSFTMEDPNVPNVYNPKQFKNYTTYIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01271410;
90% Identity: iTF_01269981;
80% Identity: -