Basic Information

Insect: Pseudomyrmex cubaensis
Gene Symbol: pita
Assembly: GCA_014825685.1
Location: QVOA01006699.1:78596-81150[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0052 0.56 11.2 2.9 1 23 238 261 238 262 0.95

2 11 0.00057 0.062 14.2 1.1 1 23 266 289 266 289 0.94

3 11 0.026 2.8 8.9 3.8 1 23 328 350 328 350 0.97

4 11 5.2e-07 5.7e-05 23.7 1.5 2 23 405 426 404 426 0.97

5 11 5.8e-05 0.0064 17.3 1.3 1 23 431 454 431 454 0.95

6 11 3.3e-05 0.0036 18.1 1.3 1 23 492 514 492 514 0.97

7 11 9e-07 9.8e-05 23.0 1.7 1 23 524 546 524 546 0.96

8 11 2.4e-06 0.00026 21.6 1.5 1 23 552 574 552 574 0.99

9 11 1e-05 0.0011 19.7 0.2 1 23 580 602 580 602 0.98

10 11 1.3e-05 0.0014 19.4 4.3 1 23 608 630 608 630 0.98

11 11 0.00046 0.051 14.5 0.4 1 21 636 656 636 657 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0052	0.56	11.2	2.9	1	23	238	261	238	262	0.95
2	11	0.00057	0.062	14.2	1.1	1	23	266	289	266	289	0.94
3	11	0.026	2.8	8.9	3.8	1	23	328	350	328	350	0.97
4	11	5.2e-07	5.7e-05	23.7	1.5	2	23	405	426	404	426	0.97
5	11	5.8e-05	0.0064	17.3	1.3	1	23	431	454	431	454	0.95
6	11	3.3e-05	0.0036	18.1	1.3	1	23	492	514	492	514	0.97
7	11	9e-07	9.8e-05	23.0	1.7	1	23	524	546	524	546	0.96
8	11	2.4e-06	0.00026	21.6	1.5	1	23	552	574	552	574	0.99
9	11	1e-05	0.0011	19.7	0.2	1	23	580	602	580	602	0.98
10	11	1.3e-05	0.0014	19.4	4.3	1	23	608	630	608	630	0.98
11	11	0.00046	0.051	14.5	0.4	1	21	636	656	636	657	0.94

Sequence Information

Coding Sequence: ATGGCATTTACAAATGATAGCGTGATGGTGAATAACGTGGTTCACACGGAACAGCTGATGGGTAATGAGTGCCGTATTTGCCTCAAGCCTTGCACAGAGGTGTGTCAGCTCTTCCAAAACAACGGCGGAATACCGGAGAAGCTGATGGCCATTGGCGCAGTGCAGGTGCAAGAAGGTGACGGTCTTCCAGCATCCATTTGTCTGTCGTGCAATCATTTGCTTGATGTATCATATGACTTCAAGTGTCAGATTCAGAATTCTGACGTAAAGCTACGTCAGATTCTGAAACTGCCTATTCTGCAGGACAATAATATGAAGGATATCATGGATGCTATGCCTGATGTAAATTTGAAAAAGGACAATGACATAGAAATTTACTCTCATGATCTCATTACTTCCAATAATACTGCAATAATTAATAATGAATCTCCTATAAGTCATGATCAGTCAAATCGCCTATGTTCTTCAATGTCAGAAGACAGTTATACCTCCTGTGATAAACAGGAGCAATTAATGTTATCTGAAGATAATAAAACATCAGACAATTTAACAGACAACAATAAGGAAGTCACAATAAAGGATGACGTTAAGAATGAGATGTCATTGGAAGATAATCAGGATGTTTTGAAGCAACTGTTAGGAATGGATAATCAAGATGTAGAAACTTGTAGTGACGACGAGGAGAAACCATTAATAAGCAGGACAACTGGATATAAGTGCTCAGATTGTATCAAATCATTTGCGACACATACAGCTTTGATGGAACATGCAAAACTTAAACATCATCCGCACTATTATTTATGTGTTTTATGCGACAAGTATCTCTCAGATAAGGCCAAGTTGAAGAAACACATGTTTACTAACCACCGAATGATGGATGATGAGACGTTGCAAGAAAGTAATCAGGATAAAAAGACCAATAAAGTATCAACAAAAGTTACCAGGAGTGGTACCATAATAGACACGAGAGAAAAAAACAAGTACATATGCAATATTTGTTCGAGGGAATTCAAATATCATAAACCCTTTTTATCTCATACCAAAAATCACTCTGCATGCAGTGAGAAAACGTCAGACGATGTATTCGACCAGTCTCAAAACAAGAGGACAAATAAACAGAAAGACAAAATCTCGGGATCCAGGGAAAACAAGTCCGAGGATGAAGATGAAGAGGAAGACGACGACGACAGCGACTTGCCGATCGAGAGTCTACAGTGTACGCAATGCGGCAAGCTCTTTGCCACAAAAAGGAACCTAAAAAGGCACATCTCAACGCACAGTGGCTTAAAGTTTAATTGTACAACTTGTGGGAAAGAATTTTCAAGGATTGACAAGTTGAAAGATCACGAGCAATCAAAGCACAAGATGGAAATATTTGGTAACACTGAAGACGAGGATGACGACGATGAGGATAATGAGAACAAAGTCAACGAGAATTCCGAGATTCGAAAGAAGGATCGTCATAACAGACCGCATCAGTGCTCGCATTGTCCAAAGGCATTTGCGCAAGCTCAATCTCTGGCAAATCACGAGGAAAGACACAAACGGGCGAAAGATACGCAGAAACGATTCCTCTGCGAAAAATGTAGCAAATGTTTTGCTCAGAGTGGCTCATTGGTAGCGCATATGCGCACACACACCGGTCATCGGCCATATGTGTGCAAAGTGTGCAGTCGCGCCTTTACCAAGAGCACGTATCTACAACTACACTTACGAACTCACAGTGGCGAGAAACCGTACATTTGCCAGTATTGTAGCAGGGCATTTGCCAGAGCCAATACTTTGGCTCGGCATATTACTATGCACACCGGCGAAGCCAAGTACTGCTGTAACATCTGCGAGAAGAAGTTTCGACGACTAACTTCGCTAAACGAACACATGTACACGCACACTGGTCAACGGCCGTATGCGTGCAAACTTTGCAACAAAAGATACAACAACGCTGGTTCCCTCTATGCTCATACAAAGAAGTGTAAGGCGCAGCAGTCGTCTAGCGGGGCGACAACTGCATTTACAGTGTCTACAGTAGATACCACGCCGCAGCAGAATGAGGCGTCTATGCCCCAATTGCTAATATATTCTCAGAGAAAATTAGAAGAGGAGCCATCAGTTAATCAAGTTATGCCAACGCCGCAATACTTGGTAGCAAATGTGCACAATCAGAAAACAATGTCCACCAATGTCATCCAGTCATTCACTATGGAGGATCCGAATGTTCCGAATGTGTACAATCCTAAACAGTTCAAGAACTATACTACTTATATTTATCCAAACATGTAA
Protein Sequence: MAFTNDSVMVNNVVHTEQLMGNECRICLKPCTEVCQLFQNNGGIPEKLMAIGAVQVQEGDGLPASICLSCNHLLDVSYDFKCQIQNSDVKLRQILKLPILQDNNMKDIMDAMPDVNLKKDNDIEIYSHDLITSNNTAIINNESPISHDQSNRLCSSMSEDSYTSCDKQEQLMLSEDNKTSDNLTDNNKEVTIKDDVKNEMSLEDNQDVLKQLLGMDNQDVETCSDDEEKPLISRTTGYKCSDCIKSFATHTALMEHAKLKHHPHYYLCVLCDKYLSDKAKLKKHMFTNHRMMDDETLQESNQDKKTNKVSTKVTRSGTIIDTREKNKYICNICSREFKYHKPFLSHTKNHSACSEKTSDDVFDQSQNKRTNKQKDKISGSRENKSEDEDEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCTTCGKEFSRIDKLKDHEQSKHKMEIFGNTEDEDDDDEDNENKVNENSEIRKKDRHNRPHQCSHCPKAFAQAQSLANHEERHKRAKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGHRPYVCKVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYCCNICEKKFRRLTSLNEHMYTHTGQRPYACKLCNKRYNNAGSLYAHTKKCKAQQSSSGATTAFTVSTVDTTPQQNEASMPQLLIYSQRKLEEEPSVNQVMPTPQYLVANVHNQKTMSTNVIQSFTMEDPNVPNVYNPKQFKNYTTYIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01271410;
90% Identity: iTF_01269981;
80% Identity: -