Basic Information

Insect: Pseudomyrmex flavicornis
Gene Symbol: -
Assembly: GCA_014825475.1
Location: QVNW01000628.1:185419-187865[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00012 0.013 16.3 0.8 1 23 273 295 273 295 0.97

2 12 0.0011 0.12 13.3 4.9 1 23 299 321 299 321 0.99

3 12 0.00038 0.04 14.8 3.0 1 23 326 348 326 348 0.96

4 12 0.00067 0.071 14.0 4.2 1 23 400 422 400 422 0.96

5 12 0.00018 0.019 15.8 1.0 1 23 427 449 427 449 0.97

6 12 0.0002 0.021 15.6 2.1 1 23 500 522 500 522 0.97

7 12 0.00027 0.029 15.2 0.9 2 23 530 551 529 551 0.97

8 12 9.2e-07 9.8e-05 23.0 2.1 1 23 561 583 561 583 0.96

9 12 0.00024 0.025 15.4 1.3 1 23 589 611 589 611 0.97

10 12 0.00015 0.016 16.0 0.7 1 23 617 639 617 639 0.98

11 12 9.5e-07 0.0001 22.9 1.4 1 23 645 667 645 667 0.98

12 12 7.9e-05 0.0084 16.9 0.3 1 22 673 694 673 694 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00012	0.013	16.3	0.8	1	23	273	295	273	295	0.97
2	12	0.0011	0.12	13.3	4.9	1	23	299	321	299	321	0.99
3	12	0.00038	0.04	14.8	3.0	1	23	326	348	326	348	0.96
4	12	0.00067	0.071	14.0	4.2	1	23	400	422	400	422	0.96
5	12	0.00018	0.019	15.8	1.0	1	23	427	449	427	449	0.97
6	12	0.0002	0.021	15.6	2.1	1	23	500	522	500	522	0.97
7	12	0.00027	0.029	15.2	0.9	2	23	530	551	529	551	0.97
8	12	9.2e-07	9.8e-05	23.0	2.1	1	23	561	583	561	583	0.96
9	12	0.00024	0.025	15.4	1.3	1	23	589	611	589	611	0.97
10	12	0.00015	0.016	16.0	0.7	1	23	617	639	617	639	0.98
11	12	9.5e-07	0.0001	22.9	1.4	1	23	645	667	645	667	0.98
12	12	7.9e-05	0.0084	16.9	0.3	1	22	673	694	673	694	0.96

Sequence Information

Coding Sequence: ATGACTTCGGACTACTTTGGCTTGCCCATTAACATGGACAGGGTGTGCAGAATCTGTCTGACCGAGAGCGCCAACCTGTCGCCCATCTTTTCTCAGGAAGTGAACGACCTGGCCGATCTTTCGCACAAGATACAAGTGTGCGGTTCCATCGAGATAAACGAACAGGACGGATTGCCCGCTCTGATATGCAGCAGTTGCGTCTACAAGGCTAATGATTCTTGTACACAAACAGACTCACAAACCAAATTTGTGCTGTTCGCGAAACAGGAACAGCAGCACTCTCGGGACGATTATTTTGTCAACAAGGAAGACTTGTCGATAGTCAATACCTGTGCGAATCCGCAAGAGTACATTGAGACTGCCGATACGTTTCCCAGAGACAACGTCAGTTTGAACGCCAATCAGATTTCCAGTTTGCCGGACGACAAACTGTTCATGTGTTCCATCGGATTCGAGGGAAACAAAGAGGAAGAGGGAAAAGATTCTTGCTTGCCGGAAGGTAACGTCCAAATGTCGATAATGCAAGAAGATGTGCAGGACACGTCCAACATCATTTACAAAGCAACGAGTCTGCAGACCAAGAGCGACGAGGTCATGGAAGTAAGTCAGTGTATGGAGAAGAGTAACGCGGAAGAGCAATTCGTCAACTTGCCGAGTGATAACGCGATAGAGGAGGAAAACGTTCCGCAGGACGTTCCGCAAAAACGAACGTCCACGAGGAAAGCGAAACTGTCGAAAACGTACAGCGACGAGGATAACATCGACGACGATTATTTCGAGCCGAGTAGCGACAGTCAGGATTCGGTAGACTCGAAGTTCAAGTGCAAGGTCTGCTCAAAGCAATACGCTACACTGAAAGGTCTGAAGAAGCACGCGTTGGTCCACGAAAAGAAGTACAAATGTAACGTTTGCTGTAAGATGTTCTACAAGCAGGAGAACATGGAGAAGCATCAGAAGATACACGCGTCGAAGCCGCACGCGTGTCAGCTCTGTCACGCGTCTTTCTCCAAGCCTCAGACTCTCGTGAGGCATCTCAAGTCCCACACGGACAAGGTGAACGACATGATCAAGCAGATCAACACGAACGAGCGGAGGGACAGCAAGGAACCGAAGAAGGAGCCCAAGCTCGAAGACGACAGCGAAGATGACGCGAGACCTGCGAACGAAACGGAGGAGTTCGAAGCCGCGCCCGAGATGTTCAAGTGCGAGACTTGCAATCAATACTGTTCGTCGTCGAAGAACTTGAAGAGACACGCTCTCTTGCACGGCGAAAAGAGGTACTCTTGCACCGTGTGCAACAAGTGGTTTTACAGACCGGATACGTTGAAGAAACACGCGGAGAAGCACGGGCACGGATTGCTCGACAATCTGGTTGACAACAACAAGATGTACGACGACTCGGACGACGAGATGCCGAGCAACAACACGGCGGAACCCCCTCCGCCGGACAACGAAAACATCAAGAAGGAGGAGAGCGACGAGGACGGGACCGGTGAGTACAAGTGTCAGCACTGCGACAAGGTCATGGCCACGAAGAAGGGTCTTCGACGACACGTGTCGTTGCACAAACCGAAGGCCGAGCCGGTGACTTGCGAGATCTGCAGAAAGGTCTGCGCGAGTCAGGCGCGTCTCGTGCTCCATCAGAGAACGCACAAGCCGAAGGAGAAGGTGCCGCGCGAGTATCTGTGCCACATTTGCAGCAAGGTTTATCCGAGCAACTCGTCGCTCACGTATCACATGCGCACCCACACCGGCGTCAAGCCGCACGTGTGCACGACGTGCAACAGCGGCTTCACGACCACGACGAGTTTGGCGAATCACATACGAATTCACACGGGCGACAAACCGTTTGTCTGTCACGTGTGTAGCGCCGCGTTCGCCGTGAGCTCGGCGTTCCGCAGACACCTGACCCGGCACACCGGCGAGGCGAATTACGTGTGTCCCACGTGCAACAAGGCCTTCAAGCGACTCAGCACGCTGAAGGAGCACACGTACACGCATTCCGGCGAGAAGCCGTACGTGTGCAAGACGTGCGGCGCCGCGTACAGTCACAGCGGCAGTCTGTTCGCGCATCAGAAACGCTGCCGCGCCCAGTACGGCGAGATGATCGTCGAGGATCAAAATCATCATCACATACCGCATCCAGTCAGTCACATTCACATGAATATGAACACCGTGAACAATGCAGGCCGACCGCTAACTGTGTTAAGTCCGACGTACTAA
Protein Sequence: MTSDYFGLPINMDRVCRICLTESANLSPIFSQEVNDLADLSHKIQVCGSIEINEQDGLPALICSSCVYKANDSCTQTDSQTKFVLFAKQEQQHSRDDYFVNKEDLSIVNTCANPQEYIETADTFPRDNVSLNANQISSLPDDKLFMCSIGFEGNKEEEGKDSCLPEGNVQMSIMQEDVQDTSNIIYKATSLQTKSDEVMEVSQCMEKSNAEEQFVNLPSDNAIEEENVPQDVPQKRTSTRKAKLSKTYSDEDNIDDDYFEPSSDSQDSVDSKFKCKVCSKQYATLKGLKKHALVHEKKYKCNVCCKMFYKQENMEKHQKIHASKPHACQLCHASFSKPQTLVRHLKSHTDKVNDMIKQINTNERRDSKEPKKEPKLEDDSEDDARPANETEEFEAAPEMFKCETCNQYCSSSKNLKRHALLHGEKRYSCTVCNKWFYRPDTLKKHAEKHGHGLLDNLVDNNKMYDDSDDEMPSNNTAEPPPPDNENIKKEESDEDGTGEYKCQHCDKVMATKKGLRRHVSLHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCTTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYVCPTCNKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVEDQNHHHIPHPVSHIHMNMNTVNNAGRPLTVLSPTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01270691; iTF_01271399; iTF_01267022; iTF_01267735; iTF_01268450; iTF_01269226;
90% Identity: iTF_01267735;
80% Identity: -