Basic Information

Insect: Pseudomyrmex dendroicus
Gene Symbol: -
Assembly: GCA_014825645.1
Location: QVNZ01024330.1:32819-35217[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00014 0.016 16.1 0.8 1 23 304 326 304 326 0.97

2 12 0.0012 0.14 13.2 4.9 1 23 330 352 330 352 0.99

3 12 0.00082 0.096 13.7 4.0 1 23 357 379 357 379 0.96

4 12 0.0007 0.082 13.9 4.2 1 23 431 453 431 453 0.96

5 12 0.00019 0.022 15.7 1.0 1 23 458 480 458 480 0.97

6 12 0.00021 0.024 15.6 2.1 1 23 530 552 530 552 0.97

7 12 0.00028 0.033 15.2 0.9 2 23 560 581 559 581 0.97

8 12 9.8e-07 0.00011 22.9 2.1 1 23 591 613 591 613 0.96

9 12 0.00025 0.029 15.3 1.3 1 23 619 641 619 641 0.97

10 12 0.00016 0.018 16.0 0.7 1 23 647 669 647 669 0.98

11 12 1e-06 0.00012 22.9 1.4 1 23 675 697 675 697 0.98

12 12 8.4e-05 0.0098 16.8 0.3 1 22 703 724 703 724 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00014	0.016	16.1	0.8	1	23	304	326	304	326	0.97
2	12	0.0012	0.14	13.2	4.9	1	23	330	352	330	352	0.99
3	12	0.00082	0.096	13.7	4.0	1	23	357	379	357	379	0.96
4	12	0.0007	0.082	13.9	4.2	1	23	431	453	431	453	0.96
5	12	0.00019	0.022	15.7	1.0	1	23	458	480	458	480	0.97
6	12	0.00021	0.024	15.6	2.1	1	23	530	552	530	552	0.97
7	12	0.00028	0.033	15.2	0.9	2	23	560	581	559	581	0.97
8	12	9.8e-07	0.00011	22.9	2.1	1	23	591	613	591	613	0.96
9	12	0.00025	0.029	15.3	1.3	1	23	619	641	619	641	0.97
10	12	0.00016	0.018	16.0	0.7	1	23	647	669	647	669	0.98
11	12	1e-06	0.00012	22.9	1.4	1	23	675	697	675	697	0.98
12	12	8.4e-05	0.0098	16.8	0.3	1	22	703	724	703	724	0.96

Sequence Information

Coding Sequence: ATGACTTCGGACTACTTTGGCTTGCCCATTAACATGGATAGGGTGTGCAGAATCTGTCTAACCGAGAGCACAAACCTGTCGCCCATCTTTTCTCAGGAAGTGAACGACCTGGCGGATCTTTCGCACAAGATACAAGTGTGCGGCTCTATTGAGATAAACGAACAGGACGGATTGCCCGCTCTGATATGCAGCAGTTGCATCTACAAGGCTAATGTCGCGCACGATTTCAGGCAGCAGTGCCAACACTCGGACGCGAGACTGCGCATGTATTATAACAAGCCCGCAAAATATAACATCACGGATTCTTGTACACAAACAGACTCACAAACCAAATTTGTGCTGTTCGCGAAACAGGAACAGCAGCATTCTCGGGACGATTATTTTGTCAACAAGGAAGACTTGTCCATAGTCAATACCTGTGCGAATCCGCAAGAGTACATTGAGACTACCGATACGTTTTCCAGAGACAACGTCAGTTTGAACGCCAATCAGATTCCCAGTTTGCCGGATGACAATTCGTTCATGTGTTCCATCGGGTTCGAGGGAAACAAAGAGGAAGAGGGAAAAGATTCTTGCTTGCCGGAAGGTAACGTCCAAATGGCGATAATGCAAGAAGTGAACGAAGTGCAAGACACGTCCAACATCATTTACAAAGCGACGAGTCTGCAGACCAAGAGCGACGAGGCCATGGAAGTAAGTCGGTGTATGGAGAAGAGTAGCACGGAAGAGCAATTCGTTAGCTTGCCGAGTGATAACGCGATAGAGGAGGAAAACATTCCGCAAGACGTTCCGCAAAAACGAACGTCCACGAGGAAAGCGAAACTGTCGAAAACGTATAGCGACGAGGATAACATCGACGACGATTATTTCGAGCCGAGTAGCGACAGTCAGGATTCGGTAGACTCGAAGTTCAAGTGCAAGGTCTGCTCGAAGCAATACGCTACACTGAAAGGTCTGAAGAAGCACGCGTTGATCCACGAAAAGAAGTACAAATGTAACGTTTGCTGTAAGATGTTCTACAAGCAGGAGAACATGGAGAAGCATCAGAAGATACACGCGTCGAAGCCGCACGCGTGTCAACTCTGCCACGCGTCTTTCTCCAAGTCTCAGACTCTCGTGAGGCATCTCAAGTCTCATACGGACAAGGTGAACGACATGATCAAGCAAATCAACACGAACGAGCGAAGGGACAGCAAGGAGCCGAAGAAGGAGCCCAAGCTCGAAGACGACAGCGAAGATGACGCGAGACCTGCGAACGAAACGGAGGAGTTCGAAACCGCGCCCGAGATGTTCAAGTGCGAGACTTGCAATCAATACTGTTCGTCGTCGAAGAACTTGAAGAGACACGCTCTCTTGCACGGCGAAAAGAGGTATTCTTGTACCGTGTGCAACAAGTGGTTTTACAGACCGGACACGTTGAAGAAACACGCGGAAAAGCACGGGCACGGATTGCTCGACAATCTGGTGGACAACAACAAGATGTACGACGACTCGGACGACGAGATGCCGAGCAACAACACGGCGGAACCCCCGCCGGAGAACGAAAACATCAAGAAGGAGGAGAGCGACGAAGACGGGACTGGTGAGTACAAGTGTCAGCACTGCGACAAGGTTATGGCCACGAAGAAAGGTCTTCGACGGCACGTGTCGTTGCACAAACCGAAGGCCGAGCCGGTGACCTGCGAGATCTGCAGAAAGGTATGCGCGAGTCAGGCGCGTCTCGTGCTCCATCAGAGAACGCACAAACCGAAGGAGAAGGTGCCGCGCGAGTATCTGTGCCACATCTGCAGCAAGGTGTATCCGAGCAATTCGTCGCTCACGTATCACATGCGCACCCACACCGGCGTCAAACCGCACGTGTGCACGACGTGCAACAGCGGCTTCACGACCACGACGAGTCTGGCGAATCACATACGAATTCACACGGGCGACAAACCGTTCGTCTGTCACGTGTGTAGTGCCGCGTTCGCCGTGAGCTCGGCGTTCCGCAGACACCTGACTCGTCACACCGGCGAGGCGAATTACGTGTGTCCCACGTGCAACAAAGCCTTCAAGCGACTCAGCACGCTGAAGGAGCACACGTACACGCATTCCGGCGAGAAGCCGTATGTGTGCAAGACGTGCGGCGCCGCGTACAGCCACAGCGGCAGCCTGTTCGCGCATCAGAAACGCTGCCGCGTCCAGTACGGCGAGATGATCGTCGAGGATCAAAATCATCATCACATACCGCATCCAGTCAGTCACATTCACATGAATATGAACACCGTGAACAACGCCGGCCGACCGCTCACTGTGTTAAGTCCGACGTACTAA
Protein Sequence: MTSDYFGLPINMDRVCRICLTESTNLSPIFSQEVNDLADLSHKIQVCGSIEINEQDGLPALICSSCIYKANVAHDFRQQCQHSDARLRMYYNKPAKYNITDSCTQTDSQTKFVLFAKQEQQHSRDDYFVNKEDLSIVNTCANPQEYIETTDTFSRDNVSLNANQIPSLPDDNSFMCSIGFEGNKEEEGKDSCLPEGNVQMAIMQEVNEVQDTSNIIYKATSLQTKSDEAMEVSRCMEKSSTEEQFVSLPSDNAIEEENIPQDVPQKRTSTRKAKLSKTYSDEDNIDDDYFEPSSDSQDSVDSKFKCKVCSKQYATLKGLKKHALIHEKKYKCNVCCKMFYKQENMEKHQKIHASKPHACQLCHASFSKSQTLVRHLKSHTDKVNDMIKQINTNERRDSKEPKKEPKLEDDSEDDARPANETEEFETAPEMFKCETCNQYCSSSKNLKRHALLHGEKRYSCTVCNKWFYRPDTLKKHAEKHGHGLLDNLVDNNKMYDDSDDEMPSNNTAEPPPENENIKKEESDEDGTGEYKCQHCDKVMATKKGLRRHVSLHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCTTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYVCPTCNKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMIVEDQNHHHIPHPVSHIHMNMNTVNNAGRPLTVLSPTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01269972;
90% Identity: iTF_01267735;
80% Identity: -