Pgra005576.1
Basic Information
- Insect
- Pseudomyrmex gracilis
- Gene Symbol
- -
- Assembly
- GCA_002006095.1
- Location
- NW:1507596-1511203[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00053 0.031 14.0 0.7 1 23 302 324 302 324 0.97 2 12 0.00097 0.058 13.2 4.9 1 23 328 350 328 350 0.99 3 12 0.00033 0.019 14.7 3.0 1 23 355 377 355 377 0.96 4 12 0.0006 0.036 13.9 4.2 1 23 429 451 429 451 0.96 5 12 0.00015 0.009 15.7 1.0 1 23 456 478 456 478 0.97 6 12 0.00017 0.01 15.6 2.1 1 23 528 550 528 550 0.97 7 12 0.00023 0.014 15.2 0.9 2 23 558 579 557 579 0.97 8 12 7.9e-07 4.7e-05 22.9 2.1 1 23 589 611 589 611 0.96 9 12 0.0002 0.012 15.3 1.3 1 23 617 639 617 639 0.97 10 12 0.00013 0.0076 16.0 0.7 1 23 645 667 645 667 0.98 11 12 8.2e-07 4.9e-05 22.9 1.4 1 23 673 695 673 695 0.98 12 12 0.0006 0.036 13.9 0.5 1 22 701 722 701 722 0.96
Sequence Information
- Coding Sequence
- ATGACTTCGGACTATTTTGGCTTGCCCATTAACATGGACAGGGTGTGCAGAATCTGTCTGACCGAGAGCGCCAATCTGTCGCCCATCTTTTCTCAGGAAGTGAACGACCTGGCGGATCTTTCGCACAAGATACAAGTATGCGGCTCCATCGAGATAAACGAACAGGACGGATTGCCTACTCTGATATGCAGCAGTTGCGTCTACAAGGCTAATGTCGCGCACGATTTCAGACAGCAGTGCCAACACTCGGACGCGAGACTGCGCATGTATTATAACAAGCCCGCAAAATATAACATCACgGATTCTTGTACACAAACAGACTCACAAACCAAATTTGTGCTGTTCGCGAAACAGGAACAGCAGCACTCTCGGCACGATTATTTTGTCAACAAGGAAGATTTGTCAATAGTCAATACCTGTGCGAATCCGCAAGAGTACATTGAGCCTACCGATACGTTTTCCAGAGACAACGTCAGTTTGAACACCAATCAGATTCCCAATTTGCCGGACAAACTGTTCATGTGTTCCATCGGGTTCGAGGGAAACAAGGAGGAAGAGGGAAAAGATTCTTGCATGCCGGAAGGTAACGTCCAAATGGAGATAATGCAAGAAGATGTGCAAGACACGTCCAACATAATTTACAAAGCGACGAGTCTACAAACCAAGAGCGACGAAGCCATGGAAGTGAGTCAGTGTATGGAGAAGAGTACCACGGAAGAGCAATTTGTCAATTTGCCGAGTGATAACGCGATAGAGGAGGAAAACGTTCCGCAGGAGGACGTTCCGCAAAAACGAACGTCCACGAGGAAAGCGAAACTGTCCAAAACGTACAGCGATGAGGATAACATAGACGACGATTATTTCGAGCCGAGTAGCGACAGTCGGGATTCGGTGGATTCGAAGTTCAAGTGCAAGGTTTGCTTGAAGCAATACGCTACACTGAAGGGTCTGAAGAAGCACGCGTTGGTCCACGAAAAGAAGTACAAATGTAATGTTTGCTGTAAGATGTTCTACAAGCAGGAGAACATGGAGAAGCATCAGAAGATACACGCGTCGAAGCCGCACGCGTGTCAGCTCTGTCACGCGTCTTTCTCCAAGCCTCAGACTCTCGTGAGGCATCTGAAGTCCCACACGGACAAGGTGAACGACATGATCAAGCAGATCAACACGAACGAGCGGAGGGATAGCAAGGAGCCGAAAAAAGAGCCCAAGCTCGAAGACGACAGCGAAGATGACGTGAGACCTGCGAACGAAACGGAGGAGTTCGAAGCCGCGCCCGAGATGTTCAAGTGCGATACTTGCAATCAATACTGTTCTTCGTCGAAGAACTTGAAGAGACACGCTCTCTTGCACGGCGAGAAGAGGTACTCTTGCACCGTGTGTAACAAGTGGTTTTACAGACCGGACACGTTGAAGAAACACGCGGAGAAGCACGGGCACGGATTGCTCGACAATCTGGCGGACAACAACAAGATGTACGACGACTCGGACGACGAGATGCCGAGCAACAACACGGCGGAACCCGCGCCGGAGAACGAGAACATCAAGAAGGAAGAGAGCGACGAGGACGGGACCGGTGAGTACAAGTGCCAGCACTGCGACAAGGTCATGGCCACGAAGAAGGGTCTGCGACGACACGTGTCGTTGCACAAACCGAAGGCCGAGCCGGTGACCTGCGAGATCTGCAGAAAGGTCTGCGCGAGCCAGGCGCGTCTCGTGCTCCATCAGAGAACGCACAAGCCGAAGGAGAAGGTGCCGCGCGAGTATCTGTGCCACATCTGCAGCAAGGTGTATCCGAGCAACTCGTCGCTCACGTATCACATGCGCACGCACACCGGCGTCAAGCCGCACGTGTGCACAACGTGCAACAGCGGATTCACGACCACGACGAGTCTGGCGAATCACATAAGAATTCACACGGGCGACAAACCGTTCGTCTGCCACGTGTGCAGCGCCGCGTTCGCCGTGAGCTCGGCGTTCCGCAGACACCTGACTCGACACACCGGCGAGGCGAATTACGTGTGTCCCACCTGCAACAAGGCCTTCAAGCGACTCAGCACGCTGAAGGAGCACACGTACACGCATTCCGGCGAGAAGCCGTACGTGTGCAAGACGTGCAGCGCCGCTTACAGCCACAGCGGCAGCCTGTTCGCTCATCAGAAACGCTGTCGCGCCCAGTACGGCGAGATGATCGTCGAGGATCAAAATCATCATCACATACAGCATCCGGTCAGTCACATTCACATGAATATGAATCCCGTGAACAACCCTGCCCGGCCGCTCACCGTGTTAAGTCCGACGTACTAA
- Protein Sequence
- MTSDYFGLPINMDRVCRICLTESANLSPIFSQEVNDLADLSHKIQVCGSIEINEQDGLPTLICSSCVYKANVAHDFRQQCQHSDARLRMYYNKPAKYNITDSCTQTDSQTKFVLFAKQEQQHSRHDYFVNKEDLSIVNTCANPQEYIEPTDTFSRDNVSLNTNQIPNLPDKLFMCSIGFEGNKEEEGKDSCMPEGNVQMEIMQEDVQDTSNIIYKATSLQTKSDEAMEVSQCMEKSTTEEQFVNLPSDNAIEEENVPQEDVPQKRTSTRKAKLSKTYSDEDNIDDDYFEPSSDSRDSVDSKFKCKVCLKQYATLKGLKKHALVHEKKYKCNVCCKMFYKQENMEKHQKIHASKPHACQLCHASFSKPQTLVRHLKSHTDKVNDMIKQINTNERRDSKEPKKEPKLEDDSEDDVRPANETEEFEAAPEMFKCDTCNQYCSSSKNLKRHALLHGEKRYSCTVCNKWFYRPDTLKKHAEKHGHGLLDNLADNNKMYDDSDDEMPSNNTAEPAPENENIKKEESDEDGTGEYKCQHCDKVMATKKGLRRHVSLHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCTTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYVCPTCNKAFKRLSTLKEHTYTHSGEKPYVCKTCSAAYSHSGSLFAHQKRCRAQYGEMIVEDQNHHHIQHPVSHIHMNMNPVNNPARPLTVLSPTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269972;
- 90% Identity
- iTF_01267735;
- 80% Identity
- -