Pden024027.1
Basic Information
- Insect
- Pseudomyrmex dendroicus
- Gene Symbol
- Sry-delta
- Assembly
- GCA_014825645.1
- Location
- QVNZ01026264.1:15906-17744[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2e-10 2.3e-07 30.9 0.1 13 38 4 28 1 33 0.87 2 3 5 5.2e+03 -2.2 0.0 30 38 77 85 77 90 0.83 3 3 8.5 8.9e+03 -3.0 0.1 30 42 106 118 106 120 0.74
Sequence Information
- Coding Sequence
- ATGGCTGTCGAGGCCGGAATGTCCCTGAGAAAAGCCGCACAGATATATTCCATACCTAAATCGGTTATACATCGATATATAAAAATCGGTTTTATGAACCGAATAAAACACACAGGAAACGACGGATATCCTCAGATTGTTAGTGTTCGTGATACGCAAGTGGTGAACTACCTGAACTGTCAGAGGGTGACTTATCCCTGCAAGAACTGCGGTAAGATCTACAACTACTACTCCAGTCTGGCGCGGCATCTGAAACACGAGTGTGGCGTGGAACCAAAATTTCACTGTCCTCTGTGCCCGTACAAAACGAAACACAAATCGAGCCTGAACACCCATCTGAACGGCAGGCACATGAAGCTGCTGAACGCCGCGGACTTGTACGCCGCGTCTAACGCCAAGTCATCTTCGATGGATGCCAGAAATTAA
- Protein Sequence
- MAVEAGMSLRKAAQIYSIPKSVIHRYIKIGFMNRIKHTGNDGYPQIVSVRDTQVVNYLNCQRVTYPCKNCGKIYNYYSSLARHLKHECGVEPKFHCPLCPYKTKHKSSLNTHLNGRHMKLLNAADLYAASNAKSSSMDARN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268615; iTF_01267176; iTF_01270128; iTF_01270833; iTF_01267476; iTF_01270420; iTF_01269717; iTF_01267894; iTF_01268950; iTF_01266809; iTF_01269407; iTF_01271126; iTF_01271565;
- 90% Identity
- iTF_01267176;
- 80% Identity
- iTF_01268615;