Pcub008125.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- Sry-delta
- Assembly
- GCA_014825685.1
- Location
- QVOA01007507.1:9431-11241[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.6e-10 2.1e-07 30.9 0.1 13 38 4 28 1 33 0.87 2 3 5.8 4.7e+03 -2.2 0.0 30 38 77 85 77 90 0.83 3 3 9.9 8.1e+03 -3.0 0.1 30 42 106 118 106 120 0.74
Sequence Information
- Coding Sequence
- ATGGCTGTCGAGGCCGGAATGTCCCTGAGAAAAGCCGCGCAGATATATTCCATACCTAAATCGGTTATACATCGATATATAAAAATCGGTTTTATGAACCGAATAAAACACACAGGAAACGACGGATATCCTCAGATTGTTAGTGTTCGTGATACGCACGTGGTGAACTACCTGAACTGTCAGAGAGTGACTTATCCCTGCAAGAACTGCGGTAAGATCTACAACTACTACTCCAGTCTGGCGCGGCATCTGAAACACGAGTGTGGCGTGGAACCAAAATTTCACTGTCCTCTGTGCCCGTACAAGACAAAGCACAAATCGAGCCTGAACACCCATCTGAACGGCAGGCACATGAAGCTGCTGAACGCCGCGGAATTGTACGCCGCGTCTAACGCGAAGTCGTCTTCGATGGATGCCAGAAATTAA
- Protein Sequence
- MAVEAGMSLRKAAQIYSIPKSVIHRYIKIGFMNRIKHTGNDGYPQIVSVRDTHVVNYLNCQRVTYPCKNCGKIYNYYSSLARHLKHECGVEPKFHCPLCPYKTKHKSSLNTHLNGRHMKLLNAAELYAASNAKSSSMDARN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268189;
- 90% Identity
- iTF_01267176;
- 80% Identity
- iTF_01267894; iTF_01268950; iTF_01269407;