Ppal006371.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- Sry-delta
- Assembly
- GCA_014825455.1
- Location
- QVNV01024140.1:25782-27668[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-10 2e-07 30.9 0.1 13 38 4 28 1 33 0.87 2 2 6.4 4.5e+03 -2.3 0.0 30 38 81 89 81 94 0.83
Sequence Information
- Coding Sequence
- ATGGCTGTCGAGGCCGGAATGTCTCTGAGAAAAGCCGCGCAGATATACTCCATACCTAAATCGGTTATACATCGATATATAAAAATCGGTTTTATGAACCGATTAAGACACACAGGAAACGAAGGATTAAATCCTCAGATTGTTAGTGTTCGTGGAAATGTTCATACGCAAGGAGTGAATTACCTGAACTGTCAGAGGGTGACTTATCCCTGCAAGAACTGCGGTAAGATCTACAACTACTACTCCAGTCTGGCGCGGCATCTGAAACACGAGTGTGGCGTGGAACCAAAATTTCACTGTCCTCTGTGCCCGTACAAGACGAAGCACAAATCGAGTCTGAACACCCATCTGAACGGCAGGCACATGAAGCTGCTGAACGCCGCGGACTTGTATGCCGCGTCTAACGCCAAGTCATCTTCGATGGATGCCAGAAATTAA
- Protein Sequence
- MAVEAGMSLRKAAQIYSIPKSVIHRYIKIGFMNRLRHTGNEGLNPQIVSVRGNVHTQGVNYLNCQRVTYPCKNCGKIYNYYSSLARHLKHECGVEPKFHCPLCPYKTKHKSSLNTHLNGRHMKLLNAADLYAASNAKSSSMDARN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268189;
- 90% Identity
- iTF_01267176;
- 80% Identity
- iTF_01271565;