Pden000267.1
Basic Information
- Insect
- Pseudomyrmex dendroicus
- Gene Symbol
- lov
- Assembly
- GCA_014825645.1
- Location
- QVNZ01024662.1:39771-43036[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7e-15 7.3e-12 45.3 0.0 1 44 529 572 529 573 0.95
Sequence Information
- Coding Sequence
- ATGTCGAGCGTCGGGGACAACCCCGACATGCCATCACTCTACTCCCTGCGTTGGAACAACCACCAAAATCATATACTGCAGACTTTCGAGGAGCTGCTAGAAGACGAAAGCTACGTCGATGTGACCTTGATCTGCCGCGAGACCAGCTTGAAGGCGCACAAAGTCGTCCTCGGTGCTTGCAGTCCTTTTTTCCGGAGGATATTCGCGGAACATCCATGCAAACATCCTTTGATCGTGTTGAAGGACTTCACGCACGCCGAGCTAAATGCGCTGATCATTTTTATGTATCGCGGCGAGGTGAAGGTCGCCCATGAAGAGCTAGCGGGATTGATGAGAGCTGCGGAATGCCTGCAAGTACGCGGTCTGTCAACATCGGAACCTAGACCGGTGACACCGGAGCCTAGGCAATCGCCGTTGTGCACGATGCACGATCTTTTTTCCGAACCGCTTAGCGAGCCGGAAGTCGCGCGACTGGCCACCCCCGAGGATGAAAATGCGATGGAGACCTCGAGGGAAATGCCGCCCATTCTGTTTCAACCAACGAGGGACCAGGCCAAGGTGCCGCACATTAGCAACATGAGTTTCGGCATTCGTGATAGCTGCGGCTCGCCGTTGCCGCGTCGGAAACAGGCGCGACCGCGCCGTCGATCGGGAGAACTGCCGCAAGATCTGAGCAGACGGTCAAGCCCGCTAACCAGCTCGAGTCCGAGCGTTCTTAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATCTCTCGGTCAAAAAGCCCGCATCGCCAAGTGATTTGGATCAGCATCACGTGAAAACAGAAGGTAGCGAGGCAACGAGCAGTCCACGCGGCTCACCGCTCACGGGCACAAGTTTACTTCATTCCGACGGTCCTGTTCAAGATATTCCGAACGCCGCGGCGGTAGCAGCGGCAGTCGCGGTTATACCGACGATGTCATTGTCATTGCCGCAGTCACATCCTCCTGAGTACCTGACAAATCTCGGACAGCTGGCTAGACAGTGGCTGCCCGGACATCCGCCGAGTCAACTACCACCCCCGCCGCTCCAGGCCCATCATCAGCGAGAGGAAAGTCCGCACGGACCCGGAAATCCGAGCTCTCATCCGTATCAGCAGCAACAACGAGACTCGCCGATGCACATGTCGCGACGCAGTTCCATCGCGGCGATGTTCAATCCGACTCTGGACAGCGTGGCGACTCTGAGCAGCGGAATCTTTTCACATGTCGCGGGCACGTACGACAGAGGAAGCCTCATCGCGGACACCCTGCTTCAAGAGAATTTCAAGTCGGAAACGCTGCAGAATCTCTTCAATACCTCGAGTTTCGGTCCGGCTAAGAAAACGAAAAAGCATCGAAACGACGCCGACGCGCCGCGCAGATGGAACGATCACAACCGCTCGCTTGGCAATAGGCCTAAGGGTCAACACAGCGCGCCGCGAGGAGGACCGCCTAGATCTTGGACAAATAACGAGCTCACAATGGCTCTGCAACATGTTTGGGAAAAAAAACTAACCACGTCGCAGGCTAGTCGCATGTTCGGCATTCCGTACAACAGCCTTCTGATGTATGTGCGCGGGAAGTACGGGAAGAGTCTGAAGCTCGAGCAGCTGCGGAGGGACTGTATCGGTGCTAATAATCCCGAAATTATAAACAATAACAATGTCAAATCCATCCAGCAGTCCGCGCAGATGAGCCACGCGCTCACGACTGGCCTGCCGCTGCAGCATCCCGGTGATAACGCCGGTTTCGGACCGCGTTCCCTTCTGGGCGGCAACCTGCCGCAACCGCAGGGTTTCTACCCCGCCGATTTTACACCTTCGACCTTTTCTATGCCAGTGAATATGGCGCATCTGTTACCTGTGAGCGAGCAGAACAGCTTTGAACCTACTGTGAACTCGAGCGGGGACAGTGGCGGTAGTGGAGGTGTAGGTGGAAGTGCGGCCGGAGGGGGAGACGGGAACAGCGGTAATGGCGGCGACCTAACGAACTCGCAGACTAGCGAAACACCATCGCCCGTCGTCGATCATCATCTTCATCATCACGAATCGTCGATGCAGCCACAACCGCCGCAGTCGATGCCCGCCTTGCTGCAGCAGAATGGATCCGACTAG
- Protein Sequence
- MSSVGDNPDMPSLYSLRWNNHQNHILQTFEELLEDESYVDVTLICRETSLKAHKVVLGACSPFFRRIFAEHPCKHPLIVLKDFTHAELNALIIFMYRGEVKVAHEELAGLMRAAECLQVRGLSTSEPRPVTPEPRQSPLCTMHDLFSEPLSEPEVARLATPEDENAMETSREMPPILFQPTRDQAKVPHISNMSFGIRDSCGSPLPRRKQARPRRRSGELPQDLSRRSSPLTSSSPSVLNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLSVKKPASPSDLDQHHVKTEGSEATSSPRGSPLTGTSLLHSDGPVQDIPNAAAVAAAVAVIPTMSLSLPQSHPPEYLTNLGQLARQWLPGHPPSQLPPPPLQAHHQREESPHGPGNPSSHPYQQQQRDSPMHMSRRSSIAAMFNPTLDSVATLSSGIFSHVAGTYDRGSLIADTLLQENFKSETLQNLFNTSSFGPAKKTKKHRNDADAPRRWNDHNRSLGNRPKGQHSAPRGGPPRSWTNNELTMALQHVWEKKLTTSQASRMFGIPYNSLLMYVRGKYGKSLKLEQLRRDCIGANNPEIINNNNVKSIQQSAQMSHALTTGLPLQHPGDNAGFGPRSLLGGNLPQPQGFYPADFTPSTFSMPVNMAHLLPVSEQNSFEPTVNSSGDSGGSGGVGGSAAGGGDGNSGNGGDLTNSQTSETPSPVVDHHLHHHESSMQPQPPQSMPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269913;
- 90% Identity
- iTF_01268397; iTF_01267468; iTF_01267684; iTF_01271343; iTF_01271116; iTF_01269175; iTF_01268940; iTF_01269913; iTF_01269711;
- 80% Identity
- iTF_01268397;