Pcub004602.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- lov
- Assembly
- GCA_014825685.1
- Location
- QVOA01003083.1:42768-46002[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8e-15 6.6e-12 45.3 0.0 1 44 523 566 523 567 0.95
Sequence Information
- Coding Sequence
- ATGTCGAGCGTCGGGGACAACCCCGACATGTCATCACTCTACTCCCTGCGTTGGAACAACCACCAAAATCACATACTGCAGACTTTCGAGGAGCTGCTAGAAGACGAAAGCTACGTCGATGTGACCTTGATCTGCCGCGAGACCAGCTTGAAGGCGCACAAAGTCGTCCTCGGTGCTTGCAGTCCTTTTTTCCGGAGGATATTTGCGGAACATCCGTGCAAACATCCTTTGATCGTGTTGAAGGATTTCACGCGCGCCGAGCTAAATGCGCTGATCATTTTTATGTATCGCGGCGAGGTGAAGGTCGCCCATGAAGAGCTAGCGGGATTGATGAGAGCTGCGGAATGCCTGCAAGTACGCGGTCTGTCAACATCGGAACCTAGACCGGTGACACCGGAGCCTAGGCAGTCGCCGTTGTGCTCGATGCACGATCTTCTTTCTGAGCCGCTTACGCCGGAAGTCGCGCAACCGGCCACCCCTGAGGAGGATGAAAATGCGATGGAGACCTCGAGGGAAATGCCGCCCATTCTGTTTCAACCAACGAGGGACCAGGCCAAGGTGCCGCACATTAGCAACATGAGTTTCGGCATTCGTGATAGCTGCGGCTCGCCGTTGCCGCGTCGGAAACAGGCGCGACCGCGCCGTCGATCGGGAGAACTGCCGCAAGATCTGAGCAGACGGTCAAGCCCGCTAACCAGCTCGAGTCCGAGCGTTCTTAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGATGTGGCGGAGAATCTCTCGGTCAAAAAGCCCGCATCGCCAAACGATTTGGATCAGCATCACGTGAAAACAGAAGGTAGCGAGGCAACGAACAGTCCACGCGACTCACCGCACACGGGCACAAGTTTACATCATCATTCCGACGCTTCTGGTCAAGATATTTCGAACGCACCGGCGGTGATGCCGACGATGGCGGCATTGTCATGTGTGCCGCAGTCACATTCTGAGTACCTGAGTACCAATCTCGGACAGTTTGCTAGGTGGCTGCCCGGACATCCGTCGAGTCAACTACCACCCCCGTCGCTCCAGGCCCATCATCAGCGAGAGGAAAGTCCGCACGGACCCGGAAATCCGAGCTCTCATCCGTATCAGCAGCAACAACGAGACTCGCCGATGCACATGTCGCGGGCACGCAGTTCGATCGCGGCGATGTTATGTCCGACTCTGGACAGCGTGGCGAATCTGAGCAGCGGGATCTTTTCACATGTCGCGGGCACGTACGACAGAGGCCTCATCCCGGACTCCCTGCTTCAAGAGAATTTCAAGCCGGAAACGCTGCAGAATCTCTTCAATACCTCGAGTTTCGGTCCGGCTAAGAAAACGAAAAAGCATCGAAACGACGCCGACGCGCCGCGCAGATGGAACGATCACAACCGCTCGCTTGGCAATAGGCCTAAGGGTCAACACAGCGCGCCGCGAGGAGGACCGCCTAGATCTTGGACAAATAACGAGCTCACAATGGCTCTGCAACATGTTTGGGAAAAAAAACTAACCACGTCGCAGGCTAGTCGCATGTTCGGCATTCCGTACAACAGCCTTCTGATGTATGTGCGCGGGAAATACGGGAAAAGTCTGAAGCTCGAGCAGTTGCGAAGGGACTGTATCGGTGCTAATAATCCCGAAATTATAAACAATAACAATGTCAAATCCATCCAGCAGTCCGCGCAGATGAGCCACGCGCTCACGACTGGCCTGCCGCTGCAGCATCCCGGTGATAACGCCGGTTTCGGACCGCGTTCCCTTCTGGGCGGCAACCTGCCGCAACCGCAGGGTTTCTACCCCGCCGATTTTACACCTTCGACCTTTTCTATGCCAGTGAATATGGCGCATCTGTTACCTGTGAGCGAGCAGAACAGCTTTGAACCTACTGTGAACTCGAGCGGGGACAGTGGCGGTAGTGGAGGTGTTGGTGGAAGTGCAGCCGGAGGCGGAGACGGGAACAGCGGTAATGGCGGCGACCTAACGAACTCGCAGACTAGCGAAACACCATCGCCCGTCGATCATCATCTTCATCATCACGAATCGTCGATGCAGCCACAACCGCCGCAGTCGATGCCCGCCTTGCTGCAGCAGAATGGATCCGACTAG
- Protein Sequence
- MSSVGDNPDMSSLYSLRWNNHQNHILQTFEELLEDESYVDVTLICRETSLKAHKVVLGACSPFFRRIFAEHPCKHPLIVLKDFTRAELNALIIFMYRGEVKVAHEELAGLMRAAECLQVRGLSTSEPRPVTPEPRQSPLCSMHDLLSEPLTPEVAQPATPEEDENAMETSREMPPILFQPTRDQAKVPHISNMSFGIRDSCGSPLPRRKQARPRRRSGELPQDLSRRSSPLTSSSPSVLNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVAENLSVKKPASPNDLDQHHVKTEGSEATNSPRDSPHTGTSLHHHSDASGQDISNAPAVMPTMAALSCVPQSHSEYLSTNLGQFARWLPGHPSSQLPPPSLQAHHQREESPHGPGNPSSHPYQQQQRDSPMHMSRARSSIAAMLCPTLDSVANLSSGIFSHVAGTYDRGLIPDSLLQENFKPETLQNLFNTSSFGPAKKTKKHRNDADAPRRWNDHNRSLGNRPKGQHSAPRGGPPRSWTNNELTMALQHVWEKKLTTSQASRMFGIPYNSLLMYVRGKYGKSLKLEQLRRDCIGANNPEIINNNNVKSIQQSAQMSHALTTGLPLQHPGDNAGFGPRSLLGGNLPQPQGFYPADFTPSTFSMPVNMAHLLPVSEQNSFEPTVNSSGDSGGSGGVGGSAAGGGDGNSGNGGDLTNSQTSETPSPVDHHLHHHESSMQPQPPQSMPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269913;
- 90% Identity
- iTF_01268184;
- 80% Identity
- iTF_01267684;