Pcoc011504.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- Dsp1
- Assembly
- GCA_014839585.1
- Location
- QVOB01013349.1:4688-5874[-]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-20 3.3e-17 63.1 0.1 1 69 127 195 127 195 0.98
Sequence Information
- Coding Sequence
- ATGGAATCTTCGGACAGAAAGAATGTCTATCTTACAAAAACCGGTGATAATTCCTTAAATTCTGGAATGAGAGACACTATGATCGTCAGCCAGACTAATATGACGCCAGAGTGCGGTGGAGAGAATGTGATGAAAGCCAACAATGTGTCTGCTGTCTCTACCAATCAGGCAAAGTGGTCCAATACCAATCAGAATAAGAACTTCATCATCAATACGGTGCCTGTGAAGAATGAGATTGTGCATCTGGAAGATGGTAATGCTCACTGCAACAACAAAAAAATGTACTATTACGATAGACATTACACAGGTCATGAAGAGCCAACGGAGAGACCGACGAAGGAACGTAGGGGAACAAAGCGATACAGAGACAAGGATGCACCGAAACGAGCATTATCGGCGTTTTTCTATTTCTGCCAAGAGTTGCGCGGTAAGATGAGGGAATTGCATCCCGAGATGGGTGTGGGCGACATTGCGAAAGAATTAGGAAAATTGTGGATGAGCACGGATCTGCAAACAAAATCCAAATACATGGCCATCGCGGAAGAGGACAGAGCTCGATACGAGAGAGAAATAATTGCGTACAACAAGAGAGTAAAGAACTACGATCCAGAAGAGGTTGGAACCGTATAA
- Protein Sequence
- MESSDRKNVYLTKTGDNSLNSGMRDTMIVSQTNMTPECGGENVMKANNVSAVSTNQAKWSNTNQNKNFIINTVPVKNEIVHLEDGNAHCNNKKMYYYDRHYTGHEEPTERPTKERRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPEMGVGDIAKELGKLWMSTDLQTKSKYMAIAEEDRARYEREIIAYNKRVKNYDPEEVGTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00625472;
- 90% Identity
- iTF_01269771; iTF_01267537; iTF_01271186; iTF_01268245; iTF_01269022; iTF_01270477; iTF_00452555; iTF_01087175; iTF_00769596; iTF_01015788; iTF_01228347; iTF_01228993; iTF_01406467; iTF_01405670; iTF_01407251; iTF_01408179; iTF_01354583; iTF_01099162; iTF_00181281; iTF_00181940; iTF_00182591; iTF_00127428; iTF_00125897; iTF_00128174; iTF_00128946; iTF_00129715; iTF_00126685; iTF_01477541; iTF_00109798; iTF_01245193; iTF_00867370; iTF_00264973; iTF_01254767; iTF_00730032; iTF_00868080; iTF_00264243; iTF_00730712; iTF_00729274; iTF_00279933; iTF_01077437; iTF_00868768; iTF_00014695; iTF_00016015; iTF_00016655; iTF_01261810; iTF_00015347; iTF_00417532; iTF_01476894; iTF_01523335; iTF_00385290; iTF_00765552; iTF_01423632; iTF_01520202; iTF_01355283; iTF_01422899; iTF_01476147; iTF_00885080; iTF_01421529; iTF_01409084; iTF_01422204; iTF_00898719;
- 80% Identity
- iTF_01269771; iTF_01267537; iTF_01269022;