Phyg038077.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029228625.1
- Location
- CM055406.1:57294402-57309777[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0083 4.7e+02 1.5 1.9 153 261 43 156 26 174 0.57 2 3 1.6e-108 9e-104 348.6 32.8 1 299 185 470 185 471 0.91 3 3 0.044 2.5e+03 -0.9 3.6 220 244 499 523 473 545 0.48
Sequence Information
- Coding Sequence
- ATGGATATAACGGACACTTCCATCACCGACGCTATAGAGAACGGGTTCGCTcataaaaaagtgaaattaaatGGCGACACAACTAGCGAAAAAAGCTCAGGCAAGAATGATAGTGAAGAAGAATTTGATTTTAGCTCAAGTGACTTAGAAGATTTAGATAGTGTTAACAGTGCCGTTGATGAAGCGGACGATTTGATTGGAACGTTGCCGACTATGGCAGTGAAATCGCACGATAACGATGATAAACATTTAATCGAATCAAAATGTGATAATTTACACACTGAAAATAGCGACAGTGCACCAGAAATGAATACGGTTGTGAATAGCGACGCGTCTAGACTCGATAAAAGTTTCATTTCGTTGAGGAGCGAACACAACGAGTTGGAGTCGATCGATTCAACAGATAATTTGATAAGCGAAACTGTCGATGATCAAATGACCAATTCCAATAACACTGCCGATACAAGTGCCTTAACGCAAATCGGTGAGGATGATGCATACAGCGATGAGGATGGTGCTATTGTAAACTTTCTTGGAAAAGCCAATGAAATAGCGGAAGCTAGACTGGCTCAGAGACGTCAAGCTCGTGCAGAAGCTCGGGAGATTCGAATGCGTGAGTTGGAGCGTCAGCAAAAAGAGCAGGAGCTAAATGCTGATCGTGTATTTGATATGCAAGCATCCGCAAATATTGATCCGTTAGGTCGCTCACGTTTGGCCATATCGTCCGTAACAGGTCCAATACGAGGTAATTCGATGTCTTCACGAAGAAGTAGCGAAGATTCGTTGGAAGAGGAGGGACGTAGTTTACGTGACATCAGACATGAACTGAAAGATGTTGAAGAGAGATTTCGTAAGGCAATGATCGCCAATGCCCAACTAGACAATGAACGAGCTTCTCAATCATATCAAATCCAATTACTAAAAGATAAGCTGGAGGAGATGGAGGAAGCTCATGCACAACTACAGAGAGAGCATAAAGATAAATGTCGTGATTATGACGCCTTAAAGCGAAACAATGATAAATTGAACGATGAATTGAAATTAACGCTGGGACAGCTAAATGAACGGGACACACTTATAGCTGAGCAAGGATTGACGATTGTAATTGTGGAGAATGATGACGGTACAGACGCAAGGAGGGCTCTAGTCAGTGTTGAAAATGCACAACTGTTAGATACTGTTCAAGGATCTTTGGATGTTCGACTCAAAAAGTTTGCTGAAGAAAAGCAAACGTTAAAGAATGAATTGCAACAATTGCATCAACAGCTGCTGGATTCAAAAACTCAAAGAAGGTCGGGGTCAATGAATGGCCCACTTGGAGATGATGACTATGAAGATGTGCAACGTGAAGCGAATAAACAAATTTCCGACTATCGTTACAAGTTGCAGAAAGCTGAACAGGAAATTGCCAGTCTACAGGCAAGCCTAGCTAGATCTGAAACTCAGGTTATAAGATACAAGAGTACGGCTGATGCTGCCGAAAAGGCGGAGTCTGAATTGAAATTAGAACGAAGGAAATTACAACGAGAGaATCGTGAAGTGTCTGAGCGACTAGAAGAATTGGAAACAGCAAACAATCACCTACTCAAACGATTAGACAAACTAAAAAATGCTAAAAGTGCTCTTCTGAAAGATCTCTGA
- Protein Sequence
- MDITDTSITDAIENGFAHKKVKLNGDTTSEKSSGKNDSEEEFDFSSSDLEDLDSVNSAVDEADDLIGTLPTMAVKSHDNDDKHLIESKCDNLHTENSDSAPEMNTVVNSDASRLDKSFISLRSEHNELESIDSTDNLISETVDDQMTNSNNTADTSALTQIGEDDAYSDEDGAIVNFLGKANEIAEARLAQRRQARAEAREIRMRELERQQKEQELNADRVFDMQASANIDPLGRSRLAISSVTGPIRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEEAHAQLQREHKDKCRDYDALKRNNDKLNDELKLTLGQLNERDTLIAEQGLTIVIVENDDGTDARRALVSVENAQLLDTVQGSLDVRLKKFAEEKQTLKNELQQLHQQLLDSKTQRRSGSMNGPLGDDDYEDVQREANKQISDYRYKLQKAEQEIASLQASLARSETQVIRYKSTADAAEKAESELKLERRKLQRENREVSERLEELETANNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246323;
- 90% Identity
- -
- 80% Identity
- -