Bodo011388.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- lrrfip2
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000598.1:13049036-13060656[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-108 3.6e-104 348.1 33.9 1 299 190 475 190 476 0.91 2 2 0.13 7.2e+02 -0.9 3.6 220 244 504 528 478 550 0.48
Sequence Information
- Coding Sequence
- atggATTCAATAGACACTTCGACCGTTGAGCCCGTAGACACTGAATCAGTgcataaaaaagtgaaattgaatGGTGATACGGATAATGCAAAAAGCGTCGATAAAAATGACAGTGAAGAGGAGTTCGACTTTAGCTCCAGCGACTTAGAAGATTTAGATAGTGTAAATAGTGCCGTCGATGAAACGGACAATTTTAGCGAGCCTTTAAAATCAAACGATAACGATGTTAATCAGTTAATCGAAGCAAAAAATGATAACATCAATGTGGGGAATGGCGACGCTGAATCAGTGATGGATACGGTTGTGATTAGCGACACATCTAGTCTTAGTAAATGTTCCAATCCGATAAGTAACGAATGCAACGACCAAGTGGATTCAATAGTCAGTACAAACGGTGAAAATAGTATGAACACTGCAACGGTTGATCGTCAACAAATCGCTGATGATCCACCAGTAAATTCCACTAGTGTTGCCAGTCCGAGTGGCCCGACGAAATGCGAAGAGGATGATGCGTACAGCGATGAGGATGGTGCTATTGTGAACTTTCTTGGAAAGGCTAATGAAATAGCCGAATCGCGACTGGCTCAGCGACGTCAAGCTCGTGCAGAGGCTCGTGAAATTCGTATGCGTGAATTGGAACGTCAGCAAAAGGAGCAGGAACAAAATGCTGACCGGGTGTTTGATATGCAAGCATCGTCGAATATCGATCCACTAGGTCGTTCACGCTTGGCCATATCGTCGGTGACTGGTCCGATACGAGGCAATTCAATGTCGTCGCGAAGGAGCAGCGAGGATTCGTTGGAGGAGGAGGGACGAAGTTTGCGTGATATTAGACACGAGCTGAAGGACGTTGAAGAGAGATTTCGTAAGGCCATGATTGCGAATGCTCAACTAGACAATGAACGAGCATCACAATCGTATCAAATTCAACTGCTTAAAGATAAGCTGGAAGAGATGGAAGAAGCCCATGCGCAACTACAGCGGGAACATAAAGATAAATGTCGCGATCATGACGCCTTAAAGCGAAATAACGATAAATTAGCGGACGAGTTAAAATTAACGCTTGGACAGCTCAATGAACGCGATACACTCATAGCTGAGCAAGGATTAGCTATTGTAATCGTGGAAAATGATGATGGTACGGACGCAAGGAGGGCTCTAGTCAGTGTTGAAAACGCACAACTATTAGATACTGTTCAAGGATCGTTAGATGTTCGACTTAAgaaatttgccgaagaaaagcAATCTTTAAAGAATGAAGTGCAACAACTGCATCAACAGCTGTTGGATTCAAAGACTCAGCGAAGGTCAGGGTCTATGAACGGTCCACTCGGTGATGATGACTACGAAGATGTACAACGCGAAGCGAATAAACAAATCGCCGACTATCGTTACAAGTTGCAGAAAGCCGAGCAAGAGATTGCCAGTTTGCAGGCGAGCCTTGCACGATCTGAAACTCAGGTTATACGTTACAAGAGTACAGCTGATGCAGCTGAAAAGGCTGAGTCAGAACTGAAATTAGAGCGCAGGAAATTACAACGAGAGaacCGTGAAGTGTCTGAACGATTAGAAGAATTGGAAACAGCCAACAACCACTTACTCAAACGATTAGACAAACTAAAAAATGCTAAAAGTGCTCTTCTAAAAGATCTCTGA
- Protein Sequence
- MDSIDTSTVEPVDTESVHKKVKLNGDTDNAKSVDKNDSEEEFDFSSSDLEDLDSVNSAVDETDNFSEPLKSNDNDVNQLIEAKNDNINVGNGDAESVMDTVVISDTSSLSKCSNPISNECNDQVDSIVSTNGENSMNTATVDRQQIADDPPVNSTSVASPSGPTKCEEDDAYSDEDGAIVNFLGKANEIAESRLAQRRQARAEAREIRMRELERQQKEQEQNADRVFDMQASSNIDPLGRSRLAISSVTGPIRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEEAHAQLQREHKDKCRDHDALKRNNDKLADELKLTLGQLNERDTLIAEQGLAIVIVENDDGTDARRALVSVENAQLLDTVQGSLDVRLKKFAEEKQSLKNEVQQLHQQLLDSKTQRRSGSMNGPLGDDDYEDVQREANKQIADYRYKLQKAEQEIASLQASLARSETQVIRYKSTADAAEKAESELKLERRKLQRENREVSERLEELETANNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265770;
- 90% Identity
- -
- 80% Identity
- -