Phyg019920.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:50105456-50122448[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-10 2.4e-07 32.0 0.0 1 38 317 355 317 360 0.90 2 4 2.8e-13 5.4e-10 40.4 0.1 1 38 371 408 371 413 0.90 3 4 1.4e-17 2.7e-14 54.2 0.0 1 45 426 471 426 471 0.97 4 4 5.6e-18 1.1e-14 55.5 0.0 1 42 478 520 478 522 0.96
Sequence Information
- Coding Sequence
- ATGATCGCTGGATTGTTACTTATCCGGAACTTTAATGCAATTAGTTTCTCAACTCAAGCATGTGAAGGTTTATTACGTACAGCTGAACAATTAAAAATCAAAGGTTTATGTGAAGTGTCTGAGCGAACAGATTGCAATGATAATTCACCGATCCGTGGTAAAGTTAAGCGAACCGGTTCGATTGATCAAAGTGATATTTCAGCCGAACAATCAGTGGCTGGAAATGTTGAAGTGCCACAAAAGTATTCAAAAAGTGATCCACCGCATGGGTCTTCACCCGTGTTAGTGTTAGAGCAACGAGTCCTAACTCGTCGCACAGAAACCAAAGATAACAAAAATATGACAAGTTTAGAAATGAATAACGGTAACATTATGGGAGTATCAATGGGCTTTCTAGATTTTGCTCCTGAACCTCCTGCACCATCCGCCACACCAGTAACGGAACACATTGATCTTAGCTGTGCCCCCAGTAATGACACACGTGACTTATCAAGTTCAACGCCTAATGGAGAGGTTCGAGCCAACTTTGAGACACTTCGGCCAATGGAGCCAGAACCATTGGAAATTGACGGTCACATTTCACAGCATTCCATTCATCATTTAGACCTATTTTCCAATAAACAACCAGCCGATGCTATTATCATTAAAACGGATGAACTACCACCAGCACCAAAACCACAACCGACAGTGGTGATGGAAGTTGATGCGAGCAGCATCAAACGTGAACAGATTTTAGGAAAACCGAATTCAAGCAGTGATGAACCAAATATGATTATCACACCCGAAATAGTTACAATGTTGACTTCTAGTCACATGGTGGAAATATACAACTCTGAATCCAGTGAAGACTCTAGACCGAGCAATGCGTTAGACGGTCAGTTACAATACACAAATCTCGTTTGCCCCAGCCAAAAGAAAGATGACGGTCAAGGTGGACAAAAAACATGGACTAAAGAGGATATGGAATCAGCTCTGGATGCGTTGCGCACGCACAATATGAGCTTAACCAAGGCGTCGGTTACGTTTGGCATCCCATCAACAACATTGTGGCAACGAGCTCATCGAATGGGCATCGATACGCCAAAAAAAGAAGGTCCGACCAAATCGTGGAGTGAAGATTCATTAAATAGTGCGCTGGAAGCCTTGCGAACCGGCCAAATTTCGGCTAACAAAGCATCAAAAGCTTATGGCATTCCATCGTCTACGCTGTACAAAATTGCGCGGAAGGAAGGAATCCGATTAGCAGCCCCTTTCAATGCAGCGCCAACAACATGGACTCAGGAAGATTTAGAACGTGCTTTAGAGGCTATTCGAACGGGAAATACATCAGTTCAAAAAGCTAGTACTGAATTTGGTATACCGACAGGTACATTGTATGGTCGCTGTAAACGGGAAGGCATTGAATTGTCAAGATCAAATCCTACTCCGTGGTCAGAAGACGCAATGACCGACGCATTAGAATCAGTTCGTGTTGGAGAAATGTCCATTAATCAAGCTGCCATTCACTACAATTTGCCATATAGTTCCTTGTATGGACGATTCAAGCGAGGAAAGTACGACATTAGTGGTTTAGAAGCATTAAGTACCTCACAAATGGACCAAAGTCCAGACAATTCGTTCCAATATAGTCCAGGTCCAAGTACGCAACaaccacaacaacaacaaatccagcaacagcaacaacaacagcagcaacaactacaacagcagcaacaacaacaacttcaACAACAGCAAACACAACAAcctcaacaaataattttgcaaCAACAACAGATTATAGTATCGTCTCCGTCAACCAATCAACAAATCATTTATCAAACCATCAAACCCGAACAAAGTTGA
- Protein Sequence
- MIAGLLLIRNFNAISFSTQACEGLLRTAEQLKIKGLCEVSERTDCNDNSPIRGKVKRTGSIDQSDISAEQSVAGNVEVPQKYSKSDPPHGSSPVLVLEQRVLTRRTETKDNKNMTSLEMNNGNIMGVSMGFLDFAPEPPAPSATPVTEHIDLSCAPSNDTRDLSSSTPNGEVRANFETLRPMEPEPLEIDGHISQHSIHHLDLFSNKQPADAIIIKTDELPPAPKPQPTVVMEVDASSIKREQILGKPNSSSDEPNMIITPEIVTMLTSSHMVEIYNSESSEDSRPSNALDGQLQYTNLVCPSQKKDDGQGGQKTWTKEDMESALDALRTHNMSLTKASVTFGIPSTTLWQRAHRMGIDTPKKEGPTKSWSEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARKEGIRLAAPFNAAPTTWTQEDLERALEAIRTGNTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTDALESVRVGEMSINQAAIHYNLPYSSLYGRFKRGKYDISGLEALSTSQMDQSPDNSFQYSPGPSTQQPQQQQIQQQQQQQQQQLQQQQQQQLQQQQTQQPQQIILQQQQIIVSSPSTNQQIIYQTIKPEQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246247; iTF_00245533; iTF_00245318;
- 90% Identity
- -
- 80% Identity
- -