Bcop012110.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- bab2
- Assembly
- GCA_014529535.1
- Location
- NW:7582076-7611999[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.7e-11 5.1e-08 32.3 0.0 1 38 426 464 426 469 0.90 2 4 5.5e-13 4.9e-10 38.8 0.1 1 38 480 517 480 522 0.90 3 4 9.2e-18 8.3e-15 54.1 0.0 1 45 535 580 535 580 0.97 4 4 4.2e-18 3.8e-15 55.2 0.0 1 42 587 629 587 631 0.96
Sequence Information
- Coding Sequence
- ATGAGAACGAAAACCATCCATCGCACTAAAATTGTAACCAATCCGTTACCATTGGAACTTTTCGAAGTCGACCAGTGCAAAATGACAACAGATCCGCAATACTTTAGTCTACGCTGGAATAACTACCAAAGCAACATGACTTCTGTGTTTCACCAGCTACTGCAAACACAATCATTTGTCGATGTTTCGTTAGCTTGCGAGGATAACACACTAAAGGCTCATAAGGTGGTACTATCAGCCTGTTCAGcatattttaagaaaatcttaTTGGACAATCCATGCAAACATCCTACCATCATATTACCCTCAGAAATTTGCTTTTCGGATCTGCGATCCATAATCGAATTTGTATATCGGGGAGAAATCGATGTGTCGGAAGCTGAATTGCAGGGATTATTACGTACAGCCgaacaattaaaaatcaaaggtTTATGTGAAGTGTCCGAACGAACGGATTACAATGATAATTCACCGAAACGCGGTAGAGTTAAACGATCGTGTTCAGACGATCAAAGTCAAACTGTAACCACCGAACAGTCCGTGACTGGAAATGTTGAAACACCACAAAAGTATTCGAAAAGTGATCATACGCAGGGATCGTCACCTGTATTAGTGTTAGAGCAACGAGTGCTAACTCGCGGCATTGAAtccaaagaaaacaaaaatatgacaAGCTTAGGAATGAATAACGGTGGCATAATGGGAGTGTCAATGGgatttttagattttgctCCTGAACCACCAGCACCATCCGCCACACCAGTAACAGAACACGTTGATTTAAATTGTGCTCCCAGTAGTGATACGCGTGACTTATCAAGCTCTACGCCAAATGGAGAGGTTCGGGTCAAATTTGAAACGCTTCGTTCAATGGATCCCGAAACGTTGGAAATTGACGGTCACATTTCGCAGCATTCCATTCATCATTTGGACTTATTTTCCAATAAACAACCAGCTGATGCTATTATCCTTAAAACTGAACAGTTACAACCATCACAAAATAAACCGCAACAGGCGATGGTGATGGAAATAGATGCGAACAACATTAAACATGAACAAAGAAAAGAAAGTGTGAACAAGGATGAACAAAATATGATAATCACACCTGAAATAGTTACAATGATGACTTCTGGTCACATGGTGGACATGTACAATTCCGAATCTAGTGAAGACTCCAAGCTAAATGGCAATCCGTCCGATGGACAATTACAGTACACAAATCTCGTTTGCGTCGGCCAGAAGAAAGATGATTGCGGCGGCGGACAAAAAACATGGACTAAAGAGGATATGGACTCAGCTCTGGACGCGCTGCGTACGCATAATATGAGCTTAACGAAAGCATCGGTCACATTCGGTATCCCATCGACGACATTATGGCAGCGAGCCCATCGAATGGGCATCGATACGCCGAAGAAAGAGGGTCCCACCAAGTCGTGGAGTGAGGATTCATTAAACAGTGCATTAGATGCTCTGCGAACGGGCCAAATTTCGGCTAACAAAGCTTCGAAAGCTTATGGCATTCCATCGTCGACGTTATACAAAATTGCGAGAAAGGAGGGCATCCGATTGGCAGCACCGTTTAATGCTGCGCCAACCACATGGACACAGGATGATTTAGAACGTGCTTTAGAGGCTATTCGAACGGGAAATACGTCGGTTCAGAAAGCTAGTACTGAATTCGGTATACCAACTGGTACATTATATGGACGCTGTAAACGAGAGGGCATCGAACTGTCGAGATCGAATCCAACGCCTTGGTCAGAAGATGCAATGACGGATGCATTGGAATCAGTTCGAGTTGGAGAAATGTCCATAAATCAAGCTGCCATTCATTACAATTTGCCATATAGTTCGTTGTATGGACGATTTAAGCGAGGAAAATACGATATTAGTGGTTTAGAAACATTAAGTACCTCACAAATGGACCAAAGTCCAGATAATTCGTTCCAATATAGTCCGGGTCCAAGTTCACAGCAAccacaacagcaacaacaacaacagcagcagcaacaacagcagcagcagcaccaacaacagcaacatcTGCAGCAACAGTTGCAGCAAACACATCAACctcaacaaataattttacagCAACAGCAAATCATAGTATCGTCACCGTCAACCAATCATCAAATCATTTATCATCAAACCATCAAACCTGAACAAAGTTGA
- Protein Sequence
- MRTKTIHRTKIVTNPLPLELFEVDQCKMTTDPQYFSLRWNNYQSNMTSVFHQLLQTQSFVDVSLACEDNTLKAHKVVLSACSAYFKKILLDNPCKHPTIILPSEICFSDLRSIIEFVYRGEIDVSEAELQGLLRTAEQLKIKGLCEVSERTDYNDNSPKRGRVKRSCSDDQSQTVTTEQSVTGNVETPQKYSKSDHTQGSSPVLVLEQRVLTRGIESKENKNMTSLGMNNGGIMGVSMGFLDFAPEPPAPSATPVTEHVDLNCAPSSDTRDLSSSTPNGEVRVKFETLRSMDPETLEIDGHISQHSIHHLDLFSNKQPADAIILKTEQLQPSQNKPQQAMVMEIDANNIKHEQRKESVNKDEQNMIITPEIVTMMTSGHMVDMYNSESSEDSKLNGNPSDGQLQYTNLVCVGQKKDDCGGGQKTWTKEDMDSALDALRTHNMSLTKASVTFGIPSTTLWQRAHRMGIDTPKKEGPTKSWSEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARKEGIRLAAPFNAAPTTWTQDDLERALEAIRTGNTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTDALESVRVGEMSINQAAIHYNLPYSSLYGRFKRGKYDISGLETLSTSQMDQSPDNSFQYSPGPSSQQPQQQQQQQQQQQQQQQHQQQQHLQQQLQQTHQPQQIILQQQQIIVSSPSTNHQIIYHQTIKPEQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265680;
- 90% Identity
- iTF_00245533;
- 80% Identity
- iTF_00245533;