Bodo009714.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000956.1:5251909-5269551[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-11 3.6e-08 32.8 0.0 1 38 252 290 252 295 0.90 2 4 2e-13 3.5e-10 39.3 0.1 1 38 306 343 306 348 0.90 3 4 3.2e-18 5.8e-15 54.6 0.0 1 45 361 406 361 406 0.97 4 4 1.5e-18 2.7e-15 55.7 0.0 1 42 413 455 413 457 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAGCTTGTGACAATTAAACAAGAGCCAGAATGGATGATAGAAGACGAATATGCACCATCTCAGCTGTACAAAGAGGACTCAAATGTTGCCTACACCGAATATGAAATAAAACCATATTACGACAACGACATTGACTTCGACTATTATAAATGCAAAAATAACGGTGGCATAATGGGAGTGTCAATGGGATTTTTAGATTTTGCTCCTGAACCACCAGCACCATCCGCCACACCAGTAACAGAACATGTTGATTTAAATTGTGCTCCCAGTAGTGATACGCGTGACTTATCAAGCTCTACGCCAAATGGAGAGGTTCGGGTCAAATTCGAAACGCTTCGTTCAATGGATCCCGAAACATTGGAAATTGACGGTCACATTTCGCAGCATTCCATTCATCATTTGGACTTATTTTCCAATAAACAACCAGCTGATGCTATTATCCTTAAAACTGAGCAGTTACAACCATCACAAAATAAACCGCAACAGGCGATGGTGATGGAAATAGATGCGAACAACATTAAACATGAACAAAGAAAAGAAAGTGTGAACAAGGATGAACAAAATATGATAATCACACCTGAAATAGTTACAATGATGACTTCTGGTCACATGGTGGACATGTACAATTCCGAATCTAGTGAAGACTCCAAGCTAAATGGCAATCCGTCCGATGGACAATTACAGTACACAAATCTCGTTTGCGTCGGCCAAAAGAAAGACGATTGCGGTGGCGGACAAAAAACATGGACTAAAGAGGATATGGACTCGGCTCTAGACGCACTGCGTACGCATAATATGAGCTTAACGAAAGCATCGGTCACATTCGGTATCCCATCGACGACATTATGGCAACGAGCCCATCGAATGGGCATCGATACGCCCAAGAAAGAAGGTCCCACCAAGTCGTGGAGTGAGGATTCGTTAAATAGTGCGTTAGATGCTTTGCGAACGGGTCAAATTTCGGCTAACAAAGCTTCGAAAGCTTATGGCATTCCATCGTCGACGTTATACAAAATTGCGAGAAAGGAAGGCATCCGATTGGCAGCACCGTTTAATGCTGCGCCAACCACATGGACGCAGGATGATTTAGAACGTGCTTTAGAGGCTATTCGAACGGGAAATACGTCGGTTCAGAAAGCTAGTACTGAATTCGGTATACCAACTGGTACACTATATGGACGCTGTAAACGAGAGGGCATCGAATTGTCGAGATCGAATCCAACGCCTTGGTCAGAAGATGCAATGACTGATGCATTGGAATCGGTTCGAGTTGGAGAAATGTCCATAAATCAAGCTGCCATTCATTACAATTTGCCATATAGTTCGTTGTATGGACGATTTAAGCGAGGAAAATACGATATTAGTGGTTTAGAAACATTAAGTACCTCACAAATGGACCAAAGTCCAGATAATTCGttccAATATAGTCCGGGTCCAAGTTCACAGCAACCacaacagcaacagcaacaacagcagcagcagcagcaacagcacCAACAACAGCAACATCTACAGCAACAGTTGCAGCAAACACATCAACCTCAACAAATAATTTTACAGCAACAACAAATCATAGTATCGTCACCGTCAACCAATCatcaaatcatttatcatcaaaCCATCAAACCTGAACAAAGTTGA
- Protein Sequence
- MEELVTIKQEPEWMIEDEYAPSQLYKEDSNVAYTEYEIKPYYDNDIDFDYYKCKNNGGIMGVSMGFLDFAPEPPAPSATPVTEHVDLNCAPSSDTRDLSSSTPNGEVRVKFETLRSMDPETLEIDGHISQHSIHHLDLFSNKQPADAIILKTEQLQPSQNKPQQAMVMEIDANNIKHEQRKESVNKDEQNMIITPEIVTMMTSGHMVDMYNSESSEDSKLNGNPSDGQLQYTNLVCVGQKKDDCGGGQKTWTKEDMDSALDALRTHNMSLTKASVTFGIPSTTLWQRAHRMGIDTPKKEGPTKSWSEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARKEGIRLAAPFNAAPTTWTQDDLERALEAIRTGNTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTDALESVRVGEMSINQAAIHYNLPYSSLYGRFKRGKYDISGLETLSTSQMDQSPDNSFQYSPGPSSQQPQQQQQQQQQQQQQHQQQQHLQQQLQQTHQPQQIILQQQQIIVSSPSTNHQIIYHQTIKPEQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265680;
- 90% Identity
- -
- 80% Identity
- -