Ppra042979.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621253.1:27290084-27291943[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.7e-10 2.2e-07 32.4 0.0 3 37 17 51 15 61 0.94
Sequence Information
- Coding Sequence
- atgGTAAGaacttacaaaaagaaaagctCCAGAAACAGTTGGGATGTAGAAAGCATGAAACACGCAATTGATGCAGTTTTAAGCAAATCAGCAGGTTACAGAAAAGCAGCTCAATTGCACGGTGTTCCACAGACCACATTAGAGCGTCACGTCGCAAAAATAAGGAAAGGCGAGATATCTCTTAATTCAACTCCAGGTAACTTTAAACCCGTATTTTCCAAACAAGAAGAAGAGGAGCTTGTTAGATACGTAAAAGATATGGAAAAACGATTATTTGGTTTGACAACTGTTGGCCTACGAAAACTAGCTTATCAGCTTGCAGAAAAAAATGCTAAAGCTCACAACTTTAAACATGATAAAAAGATTGCCGGTATAGATTGGTTAAAAGGCTTCATGAAACGTCATCCGGATTTATCAATTCGAAAACCAGAAGCCACATCGGCAGCACGAGCTATGGGTTTTAACAAAGTCGCcgtgaataaattttattctttgcTTGGGGAAGTTTatgacaaatataatttaacgccAGATAGAATATATAACTGTGACGAGACTGGAATATCATGCGTTTCCAAAACAAAGAGCAAAATCATTGCTGAAAAAGGAAGAAAACAAGTAGGCTCCCTTTCTTCTGCAGAACGAGGGCAGACGATAACCGTCGAAATATGTATGAATGCAGCCGTGCCTCCCATGCTAATATTTCCTCGACAGAGAATGAAGCAGGAGTTATTGGATCGAGCTCCTCCAGGTACTACAGCAGAATGCAATGTTCGAGGCTGGATGACGACTGAAACCTTTATGAGCTGGTTCCAAAGGTTTGTAAAATTTTCTGGGGCGTCAATAACTAAACCGGTCTTGTTACTTTTAGATGGTCATGTAACGCATACGCAGAATATAGAGGTTATTGAAAATGCACGTAAGAATGGTGTTGTGATGCTTTGCTTTCCCCCTCATTGCACCCACAGGCTCCAACCCTTAGATGTTGGCTTTATGAAACCATTAAGTGTGTATTATGATCATGCTTGTTCTAACTGGTTACGGTCGCACCCAGGGCGAATAATTACAACTTTTCAAATAAGCGAAATTTTTGCTGATGCTTATATTCAAGCTGCAACAATGTCCACGGCAATAAATGCATTCAAAAAATGTGGGATTTGGCCATTTaaccaaaataattttacagaTTCAGATTTTTTAGCTGCGTCAACAACAGACATACCGTTTACAAATGATGAGGCTGAAACAGCTCCTTCAACTACTAAAATTCAGCAACCACTGTCACCTCCCATTGAAAATGTACCTCTTGAATCTGTTTTACCTGCCATATCGACACGTTTACATCAAGAAACTCCTATCTCAGAGCCTCAGCCTGGACCATCTATGCAAGAAGAATATAGCGTTTCCCGATCTCCAATTCGAAGAGTATGTCGTGATTTAACAACTTCCTTTGACAACGCTTCTCCCAAAGACATTTTCCCCATCCCCACTGTTGAAACAACAAATCAAACTAGAAAAAATTATCGCAGAGGGAAAACAGTTGTTCTTACTTCAACCCCCTACAAAAACGAACTAGAAGAACGTGAACTTAAACGGACGAAGAAATGTTCCAATCCGAATGATCCCCGGTTGAagaaaaactcaaagaaacagAAGACTCAAAAAGCTCACTCTGATAGCGAAAATGTTAAGGAGGATACCTTATGCATCTATTGTATTGACTCGAACAATACTTATTTGAAGTCTTCGGAGCGTTGGGTGGCCTGCCAGCTATGTGGGCAGTGGGCCCATACAGCATGTGCAGGAGTTGATGACGAAGACTTGGAAGAAATCCACATCTGTTTATTCTGCGATAAATAA
- Protein Sequence
- MVRTYKKKSSRNSWDVESMKHAIDAVLSKSAGYRKAAQLHGVPQTTLERHVAKIRKGEISLNSTPGNFKPVFSKQEEEELVRYVKDMEKRLFGLTTVGLRKLAYQLAEKNAKAHNFKHDKKIAGIDWLKGFMKRHPDLSIRKPEATSAARAMGFNKVAVNKFYSLLGEVYDKYNLTPDRIYNCDETGISCVSKTKSKIIAEKGRKQVGSLSSAERGQTITVEICMNAAVPPMLIFPRQRMKQELLDRAPPGTTAECNVRGWMTTETFMSWFQRFVKFSGASITKPVLLLLDGHVTHTQNIEVIENARKNGVVMLCFPPHCTHRLQPLDVGFMKPLSVYYDHACSNWLRSHPGRIITTFQISEIFADAYIQAATMSTAINAFKKCGIWPFNQNNFTDSDFLAASTTDIPFTNDEAETAPSTTKIQQPLSPPIENVPLESVLPAISTRLHQETPISEPQPGPSMQEEYSVSRSPIRRVCRDLTTSFDNASPKDIFPIPTVETTNQTRKNYRRGKTVVLTSTPYKNELEERELKRTKKCSNPNDPRLKKNSKKQKTQKAHSDSENVKEDTLCIYCIDSNNTYLKSSERWVACQLCGQWAHTACAGVDDEDLEEIHICLFCDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00408365;
- 90% Identity
- iTF_00737410;
- 80% Identity
- -