Ppra058730.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621261.1:18621862-18623973[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-11 1.6e-08 36.1 0.2 2 42 10 50 9 52 0.91
Sequence Information
- Coding Sequence
- ATGCCTCCACGTCGAGCTCCCTGGACTCAAGAAAACTTGCGTTCTGCTATGGCAGCCGTACAACGAGGGCAGTTGACGCAGCGTGGTGCAGCAGAACGCTATAATATACCTAGACGTACGCTAAGGAACCACTTGAAAAGTAGAAATACAATGCGATGTTTAGGACGCCGTTCAATTATGACTGAAGCTCAAGAATGTGATCTTGTCAACAGAATCATAAGATTTGCAAATATAGGGATGCCACTTACTCCAAAGCTTATTCGCAGACAAGCATTCATCTTTTGTCAAAAATATGAGCTAAAACATAACTTCAACGCAGACATTGGCCTTGCTGGCAAAGACTGGCTAAAGATGTTTTTGAAACGGCATCCAGAAATTTCAAAGAGAAAGGCACAGTTCATGAATCCACCTAGGGCGCAAAAGCTAAACAGACCAATCGTTAGCCAACACTTCTCAGAAATCAAAAAACTTTATGACGAGCttgaaattataacaaaccCGCAACGACTTTACAACATAGATGAAAAGGGATGTCGGTTGACTGTTCATAGTCAACAGACTGTTCTAGCACAAAGAGGAGCTCGACGAGTCCATTTAATAGCGCCAGAGCATGCTCAAAATGTCACGATCGCAATGTGTGTCAATGCTGTCGGGACCGCTATTCCACCGATGATAATATTTAAAGGACAGAGGCAGAAACCTGAATTCAGTGACAATTTACCCGCGGGGAGTTTCGTGAAGATGTCAGCAAAAGGGAGCATGACAACTGAACTATTCGTGGAGTTCATTAAACATTTGGCAAAATATAAGACTCAAGGAAAAATTTTGTTGATCTTCGATGGAGCGTCATCGCACTTAGATTACACGATCGTTGAGGAAGCAGACCGGCATGACATAGTCCTTTATTGTCTCCCGAGTAATACTACGCACGAGCTGCAACCTCTGGACAAATCTGTGAATAAGTCGTTTGAACATTATTGGGATCAAGAGGTTTTAAGATACATGTACCAAAATCCTGAAAGACGCATAACGAAAACCAGTTTCAATACAATTTTCACAAAGGTGTGGTCACAGTGTTTGACTCACGACAATATAGTAAACGGTTTTCGAGCTACGGGCTTGTACCCTTTCAACCCTGACATATTACCTGACGAGGCATTTGCTCCATCAATTTTAACAGAGCTGCCTCCACCAACAGAACCCAGCGCTTTAGTAGGCTCAGACACAGATCATCCAGATAATTATACTGTCAATCAGCCAGAAGAACAGCTTCGAAACGAGGATGATTCTCAATCTCATTTAGAGCAAGTTCCTGATTTACCCGAGAAAAGTCCTGCTCAAAGCGCCATGGATCTAAATAATTTGTCGGTCTTAACTAACCAAGAGCATAAAGACACTATTCAATCAtctgaaaaaaatttgaatgaTGTAGAAACAACACCAAAGAAGGCACAAATCATTGTTACTCCGACCCAGTCACCGAAACCATCCACTTCAGGACTTCACAGGGCTCCTATATATCATCGTCCAATAATTTACAGCTCAGGATCCGAGAcagactctgaaacaaatattgaaTTGCAGATAACACAACTGGCATTAAACAAATCATCACTGGCCATGGATAATATATATGGTTCTGAAGAAAATATCGAAGACAGCGATGACTTTGGTTCTGATGACAACGTACCTTTGGTGAACGTCAAAGACAATAAATTTAGGTCTCCTTTTCAAGAACTACTGCCAACGCCAAACTACGCTGTGACAAAGAATAAACCTAGGAGAAAAGCTATCAATTATAAAGGCCAACGAGTCACCAAAGATCTGTTTAAGGAACAAGAAACATTGAAAGAAAATAAGTTGACAAAGAAAAGAAAACCCAAAGAATCAGAGAAGAAgactgaaaatgaaaaaaagaaaCGATCTAAAGgggataaaagaaaaagaagcaaTCTATCGGTAGAGGAATCTTGGTTCTGCCCAGCTTGCAATGAAAATCGTGTGTCTGATATGAGACAGTGTGTTAAATGCAGAATATGGTACCACGAAGAATGCCTAGGGCTAACCAAAaatgataaagattttttttactgtcaaAACTGTGATGAATAA
- Protein Sequence
- MPPRRAPWTQENLRSAMAAVQRGQLTQRGAAERYNIPRRTLRNHLKSRNTMRCLGRRSIMTEAQECDLVNRIIRFANIGMPLTPKLIRRQAFIFCQKYELKHNFNADIGLAGKDWLKMFLKRHPEISKRKAQFMNPPRAQKLNRPIVSQHFSEIKKLYDELEIITNPQRLYNIDEKGCRLTVHSQQTVLAQRGARRVHLIAPEHAQNVTIAMCVNAVGTAIPPMIIFKGQRQKPEFSDNLPAGSFVKMSAKGSMTTELFVEFIKHLAKYKTQGKILLIFDGASSHLDYTIVEEADRHDIVLYCLPSNTTHELQPLDKSVNKSFEHYWDQEVLRYMYQNPERRITKTSFNTIFTKVWSQCLTHDNIVNGFRATGLYPFNPDILPDEAFAPSILTELPPPTEPSALVGSDTDHPDNYTVNQPEEQLRNEDDSQSHLEQVPDLPEKSPAQSAMDLNNLSVLTNQEHKDTIQSSEKNLNDVETTPKKAQIIVTPTQSPKPSTSGLHRAPIYHRPIIYSSGSETDSETNIELQITQLALNKSSLAMDNIYGSEENIEDSDDFGSDDNVPLVNVKDNKFRSPFQELLPTPNYAVTKNKPRRKAINYKGQRVTKDLFKEQETLKENKLTKKRKPKESEKKTENEKKKRSKGDKRKRSNLSVEESWFCPACNENRVSDMRQCVKCRIWYHEECLGLTKNDKDFFYCQNCDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276240;
- 90% Identity
- iTF_01264357; iTF_01264358; iTF_01264536; iTF_01264353; iTF_00276240; iTF_00677491; iTF_00677482; iTF_00677492; iTF_00071327; iTF_00783366; iTF_00783364; iTF_00783365; iTF_00784329; iTF_00784332; iTF_00677488; iTF_00677489; iTF_00832849;
- 80% Identity
- -