Csas011915.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053165.1:1844370-1846484[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-11 7.7e-09 35.8 0.1 2 41 10 49 9 52 0.90
Sequence Information
- Coding Sequence
- ATGCCTCCACGTCGAGCTCCGTGGACTCAAGAAAACTTGCGTTCTGCTATGGCAGCCGTACAACGAGGGCAGTTGACGCAGCGTGGTGCAGCAGAGCGATATAATATACCTAGACGTACGCTAAGGAACCACTTGAAAAGTGGAAATACAATGCGATGTTTAGGACGCCGTTCAATTATGACTGAAGCTCAAGAATGTGATCTTGTCAACAGAATCATAAGATTTGCAAATATAGGGATGCCACTTACTCCAAAGCTTATTCGCAGGCAAGCATTCATCTTTTGTGAAAAATATGAGCTAAAACATAACTTCAACGCAGACATTGGCCTTGCTGGCAAAGACTGGCTAAAGATGTTTTTGAAACGGCATCCAGAAATTTCAAAGAGAAAGGCACAGTTCATGAATCCAGCTAGGGCGCAAAAGCTAAACAGACCAATCGTTAGCCAACACTTCTCAGAAATCAAAAAAATTTATGACGAGCTTGAAATTATAACACACCCGCAAAGACTTTACAACATAGATGAAAAGGGATGTCGGTTGACTGTTCATAGTCAACAGACTGTTCTAGCACAAAGAGGAGCTCGACGAGTCCATTTAATAGCGCCAGAACATGCTCAAAATGTCACGATCGCAATGTGTGTCAATGCTGTCGGGACCGCTATTCCACCGATGATAATATTTAAAGGACAGAGGCAGAAACCTGAATTCAGTGACAATTTACCCGCGGGGAGTTTCGTGAAGATGTCAGCAAAAGGGAGCATGACAACTGAACTATTCGTGGAGTTCATTAAACATTTGGCAAAATATAAGACTCAAGGAAAAATTTTGTTGATCTTCGATGGAGCGTCATCGCACTTAGATTACACGATCGTTGAGGAAGCAGACCGGCATGACATAGTCCTGTATTGTCTCCCGAGTAATACTACGCACGAGCTGCAACCTCTGGACAAATCTGTGAATAAGTCGTTTGAACATTATTGGGATCAAGAGGTTTTAAGATACATGTACCAAAATCCTGAAAGACACATAACGAAGACCAGTTTTAATACAATTTTCACAAAGGTGTGGTCACAGTGTTTGACTCACGACAATATAGTAAACGGTTTTCGAGCTACGGGCTTGTACCCTTTCAACCCTGACATATTACCTGACGAGGCATTTGCTCCATCAATTTTAACAGAGCTGCCTCCACCAACAGAACCCAGCGCTTTAGTAGGCTCAGACACAGATCATCCAGATAATTATACTGTCAATCAGCCAGAAGAACAGCTTCGAAACGAGGATGATTCTCAATCTCATTTAGAGCAATTTCCTGATTTACCCGAGAAAAGTCCTGATCAAAGCGCCATGGATCTAAATAATTTGTCGGTCTTAACTAACCAAGAGCATGAAGACACTATTCAATCATCTAAAAAAAAAATCTTGAATGATGTAGAAACAACACCAAAGAAGGCACAAATCATTGTTACTCCGACCCAGTCACCAAAACCATCCACTTCAGGACTTCACAGGGCTCCTATATATCGTCGTCCAATAATTTACAGCTCAGGATCCGAGACAGACTCTGAAACAAATATTGAATTGCAGATAACACAACTGGCATTAAACAAATCATCACTGGCCATGGATAATATATATGGTTCTGAAGAAAATATCGAAGACAGCGATGATTTTGGTTCTGATGACAACGTACCTTTGGCGAACCTCAAAGACAATAAATTTAGGTCTCCTTTTCAAGAACTACTACCAACGCCAAACTACGCTGTGACAAAGAATAAACCTAGGAGAAAAGCTATCAATTATAAAGGCCAACGAGTCACCAAAGATCTGTTTAAGGAACAAGAAACATTGAAAGAAAATAAGTTGACAAAGAAAAGAAAACCCAAAGAATCAGAGAAGAAGACTGAAAATGAAAAAAAGAAACGATCTAAAGGGGATAAAAGAAAAAGAAGCAATCTATCGGTAGAGGAATCTTGGTTCTGCCCAGCTTGCAATGAAAATCGTGTGTCTGATATGAGACAGTGTGTTAAATGCAGAATATGGTACCACGAAGAATGCCTAGGGCTAACCAAAAATGATAAAGATTTTTTTTACTGTCAAAACTGTGATGAATAA
- Protein Sequence
- MPPRRAPWTQENLRSAMAAVQRGQLTQRGAAERYNIPRRTLRNHLKSGNTMRCLGRRSIMTEAQECDLVNRIIRFANIGMPLTPKLIRRQAFIFCEKYELKHNFNADIGLAGKDWLKMFLKRHPEISKRKAQFMNPARAQKLNRPIVSQHFSEIKKIYDELEIITHPQRLYNIDEKGCRLTVHSQQTVLAQRGARRVHLIAPEHAQNVTIAMCVNAVGTAIPPMIIFKGQRQKPEFSDNLPAGSFVKMSAKGSMTTELFVEFIKHLAKYKTQGKILLIFDGASSHLDYTIVEEADRHDIVLYCLPSNTTHELQPLDKSVNKSFEHYWDQEVLRYMYQNPERHITKTSFNTIFTKVWSQCLTHDNIVNGFRATGLYPFNPDILPDEAFAPSILTELPPPTEPSALVGSDTDHPDNYTVNQPEEQLRNEDDSQSHLEQFPDLPEKSPDQSAMDLNNLSVLTNQEHEDTIQSSKKKILNDVETTPKKAQIIVTPTQSPKPSTSGLHRAPIYRRPIIYSSGSETDSETNIELQITQLALNKSSLAMDNIYGSEENIEDSDDFGSDDNVPLANLKDNKFRSPFQELLPTPNYAVTKNKPRRKAINYKGQRVTKDLFKEQETLKENKLTKKRKPKESEKKTENEKKKRSKGDKRKRSNLSVEESWFCPACNENRVSDMRQCVKCRIWYHEECLGLTKNDKDFFYCQNCDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264353; iTF_01264354; iTF_01264357; iTF_01264358; iTF_01264536; iTF_00677488; iTF_00832849; iTF_00783364; iTF_00783365; iTF_00783366; iTF_00784329; iTF_00677482; iTF_00784332; iTF_00677492; iTF_00071327; iTF_00677489; iTF_00213370;
- 90% Identity
- iTF_01264354;
- 80% Identity
- -