Pvib020322.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- TFIP11
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000494.1:102879-106209[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.24 1.5e+03 -1.0 0.3 47 85 344 378 301 391 0.75 2 3 8.1e-82 5.1e-78 262.9 18.6 1 275 395 660 395 660 0.98 3 3 0.22 1.4e+03 -0.9 0.1 105 126 669 690 661 701 0.73
Sequence Information
- Coding Sequence
- ATGGCTGATGAAGAATTCATCAAGTTTGAAATCACCGACGACGATCTGAATAACGAATTCACTCAACACAGAGCTCACAGACCATCCAAACATCAGCAGATTTACGGAATATGGGCCGATAAAGATTCAGATAACAGCGACGATGAGCCTCGAGATCGTAAACACTTCAGaggtaaaaaaaactaccaagCTCCGGTTAATTTCATCGCCGGAGGAATTCATCAGCCAGGTGCTAAACCAACAAATACCACAGATGATGGACGTAATAAAGAAGACGAAGAAGAACCCGAGATAATCTCTGATTCCAGCGACGAAGAATTAGTTCGTCCATCTTTTGGTAGAAAAAATCGTCCTAATTTTCCCGATTTCAATGAGTTCAATCCTAGTGAAATGGCTGGGTTGCGAAAAGCAACCCCTAAAGATCGGAATATTACCTTGGTTGATAAAGGAGTCGGTAATTGGGAAAAACATACGAAAGGAATTGGTGCGAAGTTGCTATTACAGATGGGTTTCCAACCGGGAAAAGGTTTGGGTAAAGATTTACAAGGTATCCAGGCACCTATTGAAGCACATTTAAGAAAAGGCAGAGGAGCAATCgGTGCTTATGGACCTGAGAAAAAAACCAAAGTATCGAAACTCGAGAAATCAAAGGGCGAAGATATCGAAGGTGATAAAGGAGAAAAATCCGAAAGAACGTCGTTGTGGAGAAAAGAAGGTGTAGagccgaagaaaaaaatacgctACGTTTATAAAAGCGTAGACGAGGTCATCGAAGAGAGTAAAAAAccaggaaaaaagaaaatagaaataagCGAGTTGAGTAAAGTCAAAGTAATCGATATGACTGGACCTGAGCAACGGGTTCTTTCTGGATATCATGCCATATCAGGAGTACAAAAACCTGCCGAAGAATGGGAATTaagaaaagataaaaaattctcaaatttttcgatgCCCGAATTGCaacataatttaaatttactaGTCGATGTTTCAGAACAGgccATTATTGAcaacgataaaaaaatgaaacaagatGAAGACcgtctgaaaattttggataatcaaaaaaaaaatctcagtcAAACGCAAAAACGAGATAAAATGTTGATGGATAATTTTCACAAGATGTTCGACATGGTTAATTCTGTTGTAAAATCTTCTAAAGATAAAACTCTAACGTTAGATAAAGCCGAAGCGATTTTCTCATCGATGAaaGAAAAccattttaccgaattttgtgTCTACGAAGTACCCGTGCTCGCCGTAAATATAGTCAGACCATTGCTGAAAGAACATTTAGAAAATTGGAAACTTCTGGAAGAACCTACCAAACCAATACCGGAGTTTTTAAAATGGAGAAATATTTTACAGCTCGAAGATTCTGGTCAAACGTTGCTAAACCCTTATCATAAATTAATGTGGGATGTTTGGGTACCTTGCGTTCGATCTGCTACCGATTCATGGCAGTGTCGTCAGTGGTCACCGATGGTAGATTTTATCATGAATTGGATTCCTTTTATATCGAaaggaattttagaaaatgttttacAAGATATTATATTGAGGAGAATTCAACAAAATGTAGACGAATGGAATCCATTGACCGATTGTGTTCCTATTCATTCGTGGATCTATCCTTGGATCAATTTTCTAGgtaaaaatttcgagaccAGCGTATATCCAACTATTCGACATAAACTTTCCAAAGCTTTGATAAACTGGCACCCTTCCGATGGATCAGCGAGATTAATGTTGCAGCCGTGGATGAGTGTTTTCGAACCAGGAGAAATGAATGCCTTTTTGGTAAATAACATCGTACCAAAATTACGTAGTGTTTTACTCGAATTTGTTATTAATCCACATCAGCAATGTTTagATAATTGGAAATGGGTAATGGAATGGTCTGAAATGATTCCTGCCCATACGATGGCTCAAATCCTAGACCAAAGCTTCTTTCCTAAATGGTTGCAAACTCTTAATGCTTGGCTGCATATGAATCCTGATAATGATCAAGTCAATCAATGGTTCAACGGATGGAAGAGCCTTTTACCTGATAACGTTAAAACTCAACCAATTGTAAATgATCACATTAGATCAGCAATGAATATGATAAGTCTAGCCCGGGGTGGACCAGCAGTTACAATGGAAGAACGTAAATCTAGAATACCAAATCCCaaagattcCATCGAAGCACTGAACAGAATGGCTCAACAACCTCTATCAATGAAAGACAGAATCCAAATGAGATGCGAAGAACAAGGAGTACTCTGGATGCCAGTTCCTAATCGTTATATGGAAGCTAAACAAGTATATAAATGTGGTAAATTACATGCCTACATAGATGGTAATATTGTTTTCGTCAGTCAAGGCGGTGGATCATTTACACCGATGTCTTGGCAAGAGATGttggaaaatgctgtttaa
- Protein Sequence
- MADEEFIKFEITDDDLNNEFTQHRAHRPSKHQQIYGIWADKDSDNSDDEPRDRKHFRGKKNYQAPVNFIAGGIHQPGAKPTNTTDDGRNKEDEEEPEIISDSSDEELVRPSFGRKNRPNFPDFNEFNPSEMAGLRKATPKDRNITLVDKGVGNWEKHTKGIGAKLLLQMGFQPGKGLGKDLQGIQAPIEAHLRKGRGAIGAYGPEKKTKVSKLEKSKGEDIEGDKGEKSERTSLWRKEGVEPKKKIRYVYKSVDEVIEESKKPGKKKIEISELSKVKVIDMTGPEQRVLSGYHAISGVQKPAEEWELRKDKKFSNFSMPELQHNLNLLVDVSEQAIIDNDKKMKQDEDRLKILDNQKKNLSQTQKRDKMLMDNFHKMFDMVNSVVKSSKDKTLTLDKAEAIFSSMKENHFTEFCVYEVPVLAVNIVRPLLKEHLENWKLLEEPTKPIPEFLKWRNILQLEDSGQTLLNPYHKLMWDVWVPCVRSATDSWQCRQWSPMVDFIMNWIPFISKGILENVLQDIILRRIQQNVDEWNPLTDCVPIHSWIYPWINFLGKNFETSVYPTIRHKLSKALINWHPSDGSARLMLQPWMSVFEPGEMNAFLVNNIVPKLRSVLLEFVINPHQQCLDNWKWVMEWSEMIPAHTMAQILDQSFFPKWLQTLNAWLHMNPDNDQVNQWFNGWKSLLPDNVKTQPIVNDHIRSAMNMISLARGGPAVTMEERKSRIPNPKDSIEALNRMAQQPLSMKDRIQMRCEEQGVLWMPVPNRYMEAKQVYKCGKLHAYIDGNIVFVSQGGGSFTPMSWQEMLENAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01472462;
- 90% Identity
- iTF_01262453;
- 80% Identity
- -