Plon020589.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01000974.1:1-11105[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.035 1.6e+02 2.9 0.2 27 45 33 51 28 60 0.90 2 10 0.0064 30 5.2 0.1 26 48 61 83 51 91 0.88 3 10 0.0036 17 6.0 0.0 19 45 99 125 88 131 0.84 4 10 0.0084 40 4.8 0.1 25 44 183 202 172 206 0.86 5 10 0.41 1.9e+03 -0.6 0.0 26 48 213 235 206 241 0.87 6 10 0.045 2.1e+02 2.5 0.0 26 45 257 276 250 278 0.87 7 10 0.26 1.2e+03 0.1 0.0 26 44 286 304 283 306 0.90 8 10 0.047 2.2e+02 2.4 0.0 22 44 348 370 328 384 0.78 9 10 0.23 1.1e+03 0.2 0.1 7 44 408 446 403 449 0.76 10 10 0.32 1.5e+03 -0.2 0.0 26 48 457 479 453 481 0.89
Sequence Information
- Coding Sequence
- TTACGACTGCACCATGCCGACGAAATGAACTATTATTTTAGACGACAACCGTCTGCGTGGGTAAAAGGctgtgaaaaattgcaagacGTGTTTCCTTGTTCCAATTGCCGAAGTGTATTTAAATACAAACGTAATTTGATAGCTCATTTGAAAACCGAATGTGGCAAAAAGAGATCGTTCAAATGTGATATATGTTTTAAGGAATTTACTTATAAACACAATTTAGAAAGGCATATGGGTATTTTGCATAAagtatttttctcaaaACAACCGGAGTGGACAACTAGATGCTTGGAAAAATCATCGGATACGTTCCAATGTCCCGATTGCGATAATATTTTTAAGTACAAACGTAACTTATTAGCTCATTTGAAAACCGAATGTGgcaagaaaaaatcatttaaatgcGAATTATGTTTCAAAGAATTTACTTACAAACATCATTTGAAATCACATATGGGTATGATTTTCCATTATGAAGAAATTCCAGTTAATCGCAGGCAACTTCAGTGGTCTTCGAAATGCTATGAACCAGCTCAAGAGATTTTCACATGTCCGAATTGCAGAAACGTcttcaaatacaaaaataatttagtcGCTCATATGAAAACCGATTGTGGCAAGAAGAGGTCATTCAAATGCGACGTATGTTTCAAAGAATTCAGCTACAAGCAGAGTTTGAAAACTCACATGGGCCttattcataaaatattaCTTAAACCATCGCAGTGGGTGAtcacagaatttgaaaaatcaccagaCGGGTTTCAGTGTCCTAAATGTGGTAgcgtttttaaatataaatataatcTATTCGCTCATTTGAAAACCGATTGTGGCAATATAAAGTCTTTCAAGTGCGAAGTATGTTTCAAAGACTTTAGTTAtaagcaaaatttgaaaaaacatatggGAGCAATTGTGGGCAGAATCGTATCTGAAGAATTCCGAGGACGAGGTGCTTTCGAATGTCCCAATTGTGGTCGAAAATACAAGCATAAAAGTACTTTGACTTCGCATTTGAGAAACGAATGCGGTGGTAAGAAAAGCTTTTGTTGTCCTCACTGTTCCAAGAAATTCGCCCAAAAAAGCAATTTCAAAACTCATTTGGgtgaattttttcaatcgacattacgaaatttcgcaTCCGGGGTGCGATACAGTTGTCCAAATAATTGCGGAAAAACTTACTCGAGCGAGGCAAGTGCCAAATACCATTTCAAATACGAATGTGGCAAAGAAAAAGAATACCAATGTTCTAAATGTGaaatGAAACTGATTTGTCCGTCCAATTGTGGAAAGGTTTATTCCAGTAAGGGAAGTTTGaagtttcatttgaaatacgaaTGCGGTCGAGCTAAAGAGTTCCAGTGtaaaatttgtagcaaattgTTTACCAGAAAGACTACCCTCAAGTCTCATCTTGGCATTgtgcataaaattattttagcttGA
- Protein Sequence
- LRLHHADEMNYYFRRQPSAWVKGCEKLQDVFPCSNCRSVFKYKRNLIAHLKTECGKKRSFKCDICFKEFTYKHNLERHMGILHKVFFSKQPEWTTRCLEKSSDTFQCPDCDNIFKYKRNLLAHLKTECGKKKSFKCELCFKEFTYKHHLKSHMGMIFHYEEIPVNRRQLQWSSKCYEPAQEIFTCPNCRNVFKYKNNLVAHMKTDCGKKRSFKCDVCFKEFSYKQSLKTHMGLIHKILLKPSQWVITEFEKSPDGFQCPKCGSVFKYKYNLFAHLKTDCGNIKSFKCEVCFKDFSYKQNLKKHMGAIVGRIVSEEFRGRGAFECPNCGRKYKHKSTLTSHLRNECGGKKSFCCPHCSKKFAQKSNFKTHLGEFFQSTLRNFASGVRYSCPNNCGKTYSSEASAKYHFKYECGKEKEYQCSKCEMKLICPSNCGKVYSSKGSLKFHLKYECGRAKEFQCKICSKLFTRKTTLKSHLGIVHKIILA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01262761;
- 90% Identity
- iTF_01262761;
- 80% Identity
- iTF_01262761;