Plon020589.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01000974.1:1-11105[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0058 8.5 6.9 0.2 18 43 32 54 12 55 0.86 2 13 0.0019 2.7 8.5 1.2 16 39 59 79 56 97 0.86 3 13 0.017 24 5.4 0.3 16 43 104 128 85 129 0.87 4 13 0.02 30 5.1 1.9 14 39 131 153 129 167 0.83 5 13 0.0029 4.3 7.8 0.1 16 43 182 206 176 207 0.89 6 13 0.036 53 4.3 0.5 16 39 211 231 208 236 0.75 7 13 0.013 20 5.7 0.0 18 43 257 279 249 280 0.90 8 13 0.008 12 6.4 0.1 16 39 284 304 282 314 0.90 9 13 0.004 5.9 7.4 1.9 15 43 320 345 310 346 0.87 10 13 0.0023 3.4 8.2 0.7 18 39 352 370 348 379 0.88 11 13 0.85 1.3e+03 -0.1 0.1 22 29 393 400 391 409 0.83 12 13 5.7 8.3e+03 -2.7 6.1 11 31 420 441 402 451 0.74 13 13 0.0008 1.2 9.6 2.1 17 43 456 479 448 480 0.86
Sequence Information
- Coding Sequence
- TTACGACTGCACCATGCCGACGAAATGAACTATTATTTTAGACGACAACCGTCTGCGTGGGTAAAAGGctgtgaaaaattgcaagacGTGTTTCCTTGTTCCAATTGCCGAAGTGTATTTAAATACAAACGTAATTTGATAGCTCATTTGAAAACCGAATGTGGCAAAAAGAGATCGTTCAAATGTGATATATGTTTTAAGGAATTTACTTATAAACACAATTTAGAAAGGCATATGGGTATTTTGCATAAagtatttttctcaaaACAACCGGAGTGGACAACTAGATGCTTGGAAAAATCATCGGATACGTTCCAATGTCCCGATTGCGATAATATTTTTAAGTACAAACGTAACTTATTAGCTCATTTGAAAACCGAATGTGgcaagaaaaaatcatttaaatgcGAATTATGTTTCAAAGAATTTACTTACAAACATCATTTGAAATCACATATGGGTATGATTTTCCATTATGAAGAAATTCCAGTTAATCGCAGGCAACTTCAGTGGTCTTCGAAATGCTATGAACCAGCTCAAGAGATTTTCACATGTCCGAATTGCAGAAACGTcttcaaatacaaaaataatttagtcGCTCATATGAAAACCGATTGTGGCAAGAAGAGGTCATTCAAATGCGACGTATGTTTCAAAGAATTCAGCTACAAGCAGAGTTTGAAAACTCACATGGGCCttattcataaaatattaCTTAAACCATCGCAGTGGGTGAtcacagaatttgaaaaatcaccagaCGGGTTTCAGTGTCCTAAATGTGGTAgcgtttttaaatataaatataatcTATTCGCTCATTTGAAAACCGATTGTGGCAATATAAAGTCTTTCAAGTGCGAAGTATGTTTCAAAGACTTTAGTTAtaagcaaaatttgaaaaaacatatggGAGCAATTGTGGGCAGAATCGTATCTGAAGAATTCCGAGGACGAGGTGCTTTCGAATGTCCCAATTGTGGTCGAAAATACAAGCATAAAAGTACTTTGACTTCGCATTTGAGAAACGAATGCGGTGGTAAGAAAAGCTTTTGTTGTCCTCACTGTTCCAAGAAATTCGCCCAAAAAAGCAATTTCAAAACTCATTTGGgtgaattttttcaatcgacattacgaaatttcgcaTCCGGGGTGCGATACAGTTGTCCAAATAATTGCGGAAAAACTTACTCGAGCGAGGCAAGTGCCAAATACCATTTCAAATACGAATGTGGCAAAGAAAAAGAATACCAATGTTCTAAATGTGaaatGAAACTGATTTGTCCGTCCAATTGTGGAAAGGTTTATTCCAGTAAGGGAAGTTTGaagtttcatttgaaatacgaaTGCGGTCGAGCTAAAGAGTTCCAGTGtaaaatttgtagcaaattgTTTACCAGAAAGACTACCCTCAAGTCTCATCTTGGCATTgtgcataaaattattttagcttGA
- Protein Sequence
- LRLHHADEMNYYFRRQPSAWVKGCEKLQDVFPCSNCRSVFKYKRNLIAHLKTECGKKRSFKCDICFKEFTYKHNLERHMGILHKVFFSKQPEWTTRCLEKSSDTFQCPDCDNIFKYKRNLLAHLKTECGKKKSFKCELCFKEFTYKHHLKSHMGMIFHYEEIPVNRRQLQWSSKCYEPAQEIFTCPNCRNVFKYKNNLVAHMKTDCGKKRSFKCDVCFKEFSYKQSLKTHMGLIHKILLKPSQWVITEFEKSPDGFQCPKCGSVFKYKYNLFAHLKTDCGNIKSFKCEVCFKDFSYKQNLKKHMGAIVGRIVSEEFRGRGAFECPNCGRKYKHKSTLTSHLRNECGGKKSFCCPHCSKKFAQKSNFKTHLGEFFQSTLRNFASGVRYSCPNNCGKTYSSEASAKYHFKYECGKEKEYQCSKCEMKLICPSNCGKVYSSKGSLKFHLKYECGRAKEFQCKICSKLFTRKTTLKSHLGIVHKIILA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01263019; iTF_01262778;
- 90% Identity
- iTF_01263019; iTF_01262778;
- 80% Identity
- iTF_01263019; iTF_01262778;