Pter020729.1
Basic Information
- Insect
- Protophormia terraenovae
- Gene Symbol
- -
- Assembly
- GCA_951394005.1
- Location
- OX596075.1:110264170-110266050[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.6e-08 0.00024 21.9 0.0 8 39 385 416 383 419 0.87 2 4 2.6e-14 9.2e-11 42.4 0.0 5 44 436 475 434 476 0.92 3 4 0.012 44 5.0 0.0 27 38 505 516 501 522 0.88 4 4 6.5e-15 2.3e-11 44.3 0.0 4 41 544 581 544 583 0.92
Sequence Information
- Coding Sequence
- ATGAACAATTTAAAGTGGATGGGCCATTCGGCCACAATATTAGATATACATAAAAATCTACGAGCCGATTTAAAGAGTTGTGATGTGACTTTAGTGGCTAAGGGACACTGTGTTAAGGCCCATCGTTTTGTTTTATCATCGTGCAGTGATTTATTACGTTGCCTCTTAACGGATGTACCCATTGGCCAGGAATGTTGTGTAATGGTGCCCGACATTAAGGGTCATTTGTTGGATAATGTTTTGGCGTTTATATATTTGGGAGAATGTTCTTTATCTTCAACAAATTTGTCCGAGTTTTTGGAAGCTATCAACGTAATGGGCATTAAGAGTGCCATAAGTTTTGAATATAACAACACAACTATGGCTACTACTTCAAGTAATTCTATGGCCACCCGACAAGTGACTATAGGCAATTCTGCAGATACAATGCATCAGGAAGAAATAATTGAAACCCAGAGTGTAATGCATACTGAGGCCCATACCTCTGCTGCTAGCGGAGTTAATAATTCGGGTCAAACTAGAGAACTGGACTTTTTAGATGTATATCATGAACCTCAACATAAAATTACATATTCAATTGAACATGTTCCAGGTTCAACGGCTggtaatgaatttattttaacggAAAACTCTGGTACTTTTACACTGACACACAGCGGTAAGTTAGAAGCTACTACATCAGCCACAGACTCTTCTAACATGGATGTTACAGAAGATGAGGCATGTGAGGCTCATATTATAGAAGAATATAGTAGTGGCGATGAACCTTTAATACAAATAGGCGAAACAGTACAAGAACAACATAGTGTTACAGTGGGACAACCTACAGcacaacaacatcatcatcaacaaTCGACAACATCCACTGGTAGTGCAGCAACATCCACGACTACAACTTCAATTATACAAGTAAAACCAAAAATGAAAACTCTCAAGCTTAAACATCAGCCGGCCACTCAGCAGATCATAACCAAAATGGAGGAAATGCCGGAGGATACAGGGAACGATGATCCCATATCGATATTACAGACATCAAATGAAAGTTTTACCCTGCTCAAAGATGGTACAATGGTATCTACCGATAATATCAATCACGATGAATCGACtgatttttctatgaataacTCTGTTGGCTCATCGGCAGCCGATTTGGCCTATCAAGCTATGGTCAATGAGGGAATGTCGTTACCAAAGGCGGCAGATAAATTTAATGTTTCCAAAGCGGAATTGTGGCGTCGCGTCCGTAGTACGGGCGTTGATCAACTGAACAAATCAGTTAAAATGGATACTGACAAGATTGATGTTATAGAACTAGCCAGTAAGGCGGTTATAAATGAAGGATTGTCCCTACAAAAGGCCGCTATCCGCTATGACATCTCTAAAACAGTGCTATGGCGCAGAGTACGCAAACATCCGCAATACATGAAGACAGCACGTGAAAATCCAATTATAGCTAAAGCCTATGAACGTTTAAAATCTGGTGAATCTCTTAAAAGCATATCACAAGATTTAGATATACCCATGTCAACTTTGCATCGTCATAAAGTGCGTCTTTCGCAAACAGGTCAGTTGCCCGATTTTGTTACGTGCAAAAAGCGCGATAGCATGTCTAAAGATGatcttaaattaaaactttccAAAGCAGTGCATGCTTGCGTGCACGAAGGCATGTCACAAAATCATGCAgctaatttatttcaaatttctaAAAGTACATTGTGGCGACATTTGCAAAAACGTGTAGCCGAAGCTGAGGCAGCTGAGACTGAATCTATGGGCGATGAGGATGAAATTAAGCAAGAAGTCATTCTTTCATAA
- Protein Sequence
- MNNLKWMGHSATILDIHKNLRADLKSCDVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCVMVPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINVMGIKSAISFEYNNTTMATTSSNSMATRQVTIGNSADTMHQEEIIETQSVMHTEAHTSAASGVNNSGQTRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEATTSATDSSNMDVTEDEACEAHIIEEYSSGDEPLIQIGETVQEQHSVTVGQPTAQQHHHQQSTTSTGSAATSTTTTSIIQVKPKMKTLKLKHQPATQQIITKMEEMPEDTGNDDPISILQTSNESFTLLKDGTMVSTDNINHDESTDFSMNNSVGSSAADLAYQAMVNEGMSLPKAADKFNVSKAELWRRVRSTGVDQLNKSVKMDTDKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIIAKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01261132; iTF_01194520; iTF_01194315; iTF_01259133; iTF_01259323;
- 80% Identity
- iTF_01261132;