Basic Information

Insect: Phormia regina
Gene Symbol: -
Assembly: GCA_001735585.1
Location: MINJ01172390.1:1938-3818[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5e-08 0.00023 21.8 0.0 8 39 406 437 404 440 0.87

2 4 1.9e-14 8.7e-11 42.4 0.0 5 44 457 496 454 497 0.93

3 4 0.0093 43 4.9 0.0 27 38 526 537 522 543 0.88

4 4 4.9e-15 2.3e-11 44.2 0.0 4 41 565 602 565 604 0.92

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5e-08	0.00023	21.8	8	39	406	437	404	440	0.87
2	4	1.9e-14	8.7e-11	42.4	5	44	457	496	454	497	0.93
3	4	0.0093	43	4.9	27	38	526	537	522	543	0.88
4	4	4.9e-15	2.3e-11	44.2	4	41	565	602	565	604	0.92

Sequence Information

Coding Sequence: atgaacaatttaaaGTGGATGGGCCATTCGGCCACTATATTAGATATACATAAAAATCTACGAGCCGATTTGAAGAGTTGTGATGTGACTTTGGTGGCTAAGGGACACTGTGTCAAAGCTCATCGTTTTGTTTTATCATCATGCAGTGATTTGCTACGTTGCCTTTTAACCGATGTACCCATTGGCCAGGAATGTTGTGTAATGGTACCTGACATTAAGGGCCATTTGTTGGACAATGTTTTGGCGTTTATATATTTGGGAGAATGTTCTTTGTCTTCAACAAATTTATCCGAGTTTCTGGAAGCCATCAATGTAATGGGCATCAAGAGTGCCATAAGTTTTGAATGTAATACGAATGCTTTACAGTCAGCTCAAAATACCAGTAGTCAAAACAATAGTATTGGACTAGACAACAATACAACGATGGCTCCTTCAAATAATTCTATTCCTACCCGGCAAGTGACCATAGGCAATTCTGCAGATACAATACATCAGGAAGAAATAATTGAGACGCAGAGTGTAATGCATACTGAGGCGCACACATCTGAAGCTAGCGGCGTTAATAATTCGGGTCAAACTAGGGAACTGGACTTTTTAGATGTATATCATGAACCTCaacataaaattacatattcaATTGAACATGTTCCAGGCTCAACGGCTggtaatgaatttattttaacagaaaacTCTGGTACTTTTACACTGACACACAGCGGCAAGTTAGAAGCAACTACATCAGCCACAGACTCTTCTAACATGGATGTTACAGAAGATGAGGCATGCGAGGCTCATATTATAGAGGAATACAGTAGTGGCGATGAACCTTTAATACAAATAGGCGAAACAGTACAAGAGCAACATAGTGTTACAGTGGCACAACCTAcagtacaacaacaacatcatcaccaACAATCTGCAACATCCCCTAGTAGTGCAGCAACATCAACGACTACAACTTCAATTATACAAGTAAAACCAAAAATGAAAACTCTCAAGCTTAAACATCAACCCTCCACTCAGCAGATCATAACCAAAATGGAAGAAATGCCGGAGGAGACAGGTAACGATGATCCCATATCGATATTACAGACATCAAATGAAAGTTTTACCCTGCTCAAAGATGGCACAATGGTATCCACAGGTACTTCTAATAACGATGAATCGACagatttttctatgaataactCGGCAAGCACATCGGCTGCCGATTTGGCCTATCAAGCTATGGTTAATGAGGGAATGTCTCTACCAAAGGCTGCAGATAAATTTAATGTGTCCAAAGCGGAATTGTGGCGTCGAGTCCGTAGTACGGGCGTTGATCAACTAAACAAATCGGTCAAAATGGATCCTGACAAGATTGATGTTATAGAACTAGCCAGTAAGGCTGTTATAAATGAAGGTTTGTCTCTACAAAAGGCCGCCATACGCTATGATATCTCTAAAACGGTGCTATGGCGTAGGGTACGTAAACATCCGCAATACATGAAAACAGCACGTGAAAATCCAATTATAGCAAAAGCCTACGAACGTTTAAAATCAGGCGAATCTCTTAAAAGCATATCACAAGATTTAGATATACCAATGTCAACTTTGCATCGTCATAAAGTGCGCCTCTCACAAACAGGTCAGTTGCCCGATTTTGTTACATGCAAAAAACGCGATAGTATGTCTAAAGATgatcttaaattaaaactttccaAAGCAGTGCATGCTTGCGTGCACGAAGGCATGTCACAAAATCATGCCgctaatttatttcaaatttctaaaagtaCATTGTGGCGACATTTGCAAAAACGTGTTGCCGAAGCTGAGGCAGCCGAGACTGAATCTATAGGCGATGAGGATGAAATTAAACAAGAAGTCATTCTATCATAA
Protein Sequence: MNNLKWMGHSATILDIHKNLRADLKSCDVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCVMVPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINVMGIKSAISFECNTNALQSAQNTSSQNNSIGLDNNTTMAPSNNSIPTRQVTIGNSADTIHQEEIIETQSVMHTEAHTSEASGVNNSGQTRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEATTSATDSSNMDVTEDEACEAHIIEEYSSGDEPLIQIGETVQEQHSVTVAQPTVQQQHHHQQSATSPSSAATSTTTTSIIQVKPKMKTLKLKHQPSTQQIITKMEEMPEETGNDDPISILQTSNESFTLLKDGTMVSTGTSNNDESTDFSMNNSASTSAADLAYQAMVNEGMSLPKAADKFNVSKAELWRRVRSTGVDQLNKSVKMDPDKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIIAKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESIGDEDEIKQEVILS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00199788;
90% Identity: iTF_01260914;
80% Identity: iTF_01194520;