Pazu008850.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000227.1:410948-412825[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-07 0.00021 21.2 0.0 8 38 405 435 403 438 0.87 2 4 2.6e-14 5e-11 42.4 0.0 5 44 456 495 453 496 0.93 3 4 0.013 25 4.9 0.0 27 38 525 536 521 542 0.88 4 4 6.8e-15 1.3e-11 44.2 0.0 4 41 564 601 564 603 0.92
Sequence Information
- Coding Sequence
- ATGAACAATTTAAAGTGGATGGGCCATTCGGCCACAATATTAGATATACATAAAAATCTACGAGCCGATTTGAAGAGTTGTGATGTGACTTTGGTAGCTAAGGGTCACTGTGTTAAGGCCCATCGCTTTGTTTTATCATCGTGCAGTGATTTGTTACGTTGCCTCTTAACGGATGTGCCCATTGGCCAGGAATGTTGTATAATGGTGCCCGACATAAAGGGTCATCTATTGGATAATGTTTTGGCGTTTATATATTTGGGAGAATGTTCTTTATCTTCAACAAATTTGTCAGAGTTTTTGGAAGCCATCAATGTAATGGGCATTAAAAGTGCCATAAGTTTTGAATGTAATACGAATGCCTTGCAGTCAGCTCAAAATGCCAGTAGTCAAAACAATAGCATTGGACTAGATAACAACACAACTATTGCTCCTTCAAGTAATTTAATAGCCAACCGGCAAGTTACCATAGGCAATTCTGCTGAAACAATGCATCAAGAGGAAATAATTGAAACTCATAGTGTAATGCATACTGAGGCCCATACCGCTGCTGCTAACAGCGTTAATAATTCAGGTCAAACTAGAGATCTAGACTTTTTAGATGTATACCATGAACCTCAACATAAAATTACATATTCAATTGAACATGTTCCAGGCTCAACGGCTGGTAATGAATTTATTTTAACGGAAAACTCTGGCACCTTCACACTGACACACAGCGGTAAATTAGAAGATACTACATCACCCACAGACTCTTCTAACATGGAAGTTACGGAAGACGAGGCATGTGAGGCCCATATTATAGAGGAATACAGTAGTGGCGATGAACCATTAATACAAATAGGCGAAACAGTACAAGAACAACATAGTGTTACAGTGGCACAACCTACACCAGCACAACATCATCACCAACAATCAACATTATCCATTGGTAGTGCAGCCACATCCACGACTACAACTTCAATTATACAAGTAAAACCAAAAATGAAAACTCTCAAGCTTAAACATCAGCCTGCTACTCAGCAGATCATAACCAAAATGGAGGAACTGCAGGAGAATACTGGAAACGATGATCCCATATCGATATTACAGACATCAAATGAAAGTTTTACTCTGCTCAAAGATGGTACAATGGTGTCCACCGGTAATACTAGTCACGATGAATCGACTGACTTTTCTATGAATAACTCTGGTGGATCATCGGCAGCCGAATTGGCCTATCAAGCTATGGTTAACGAAGGAATGTCGCTACCAAAGGCGGCAGATAAATTTAATGTTTCAAAAGCGGAATTGTGGCGTCGCGTGCGTAGTATGGGCGTTGATCAATTGAATAAATCAGTTAAAATGGATCCAGACAAAATAGATGTTATAGAACTAGCCAGTAAGGCGGTTATAAATGAAGGTTTATCCCTACAAAAGGCCGCCATACGCTATGACATATCTAAAACGGTGCTATGGCGCAGGGTACGCAAACATCCGCAATACATGAAGACAGCACGAGAAAATCCAATTATAGCTAAAGCCTATGAACGTTTAAAATCTGGCGAATCTCTTAAAAGCATATCACAAGATTTAGATATACCCATGTCAACTTTACATCGTCATAAAGTGCGTCTCTCGCAAACAGGTCAGTTGCCCGATTTTGTTACGTGTAAAAAACGCGACAGCATGTCTAAAGATGATCTAAAATTAAAACTTTCCAAGGCAGTGCATGCTTGCGTGCACGAAGGCATGTCACAAAATCATGCCGCTAATTTATTTCAAATTTCTAAAAGTACATTGTGGCGACATTTGCAAAAACGTGTAGCCGAAGCAGAGGCAGCTGAGACTGAGTCTATGGGAGATGAGGATGAAATTAAACAAGAAGTCATTCTTTCATAA
- Protein Sequence
- MNNLKWMGHSATILDIHKNLRADLKSCDVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCIMVPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINVMGIKSAISFECNTNALQSAQNASSQNNSIGLDNNTTIAPSSNLIANRQVTIGNSAETMHQEEIIETHSVMHTEAHTAAANSVNNSGQTRDLDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEDTTSPTDSSNMEVTEDEACEAHIIEEYSSGDEPLIQIGETVQEQHSVTVAQPTPAQHHHQQSTLSIGSAATSTTTTSIIQVKPKMKTLKLKHQPATQQIITKMEELQENTGNDDPISILQTSNESFTLLKDGTMVSTGNTSHDESTDFSMNNSGGSSAAELAYQAMVNEGMSLPKAADKFNVSKAELWRRVRSMGVDQLNKSVKMDPDKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIIAKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01260914;
- 80% Identity
- iTF_01259323;