Ppyg000892.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Protodeltote pygarga
Gene Symbol
litaf
Assembly
GCA_936440985.2
Location
CAKZFI020000008.1:1639625-1640306[+]

Transcription Factor Domain

TF Family
zf-LITAF-like
Domain
zf-LITAF-like domain
PFAM
PF10601
TF Group
Zinc-Coordinating Group
Description
Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.7e-22 5.6e-19 68.3 14.5 2 68 94 164 93 166 0.88

Sequence Information

Coding Sequence
ATGGCAAGTAATCAAGGCCCAGGTGCAGGGCCCTCGGCGCCTGAAGATCTTCCTCCACCGTATTCTGCTGTAGTGGGTAATCCACAATATGGCTTTGTTGCGCCTGGAGGCGAGCCATATACTGCTCCAGGTGGCCCTTATCCGCAGCCAAAGCAGTTTACAGCGCCAGGGGTGTATCCGCACCCTAGCATCACAGTGACGAACGCGCAACCACAAGCAGGTGACATGCCACCGGGTGGAGTGCCCGTTGGCATCGTACTTCCACCCGCAGTCGGCACTGAACCGACCACAACAACATGCTTCAATTGTGGTAAAATTGTTACTACAAGAGTGACATACACGACGGCCTGGCACACACATCTAGTTGCTGGATCCATATGTGTCATTACTATGGTTTGCTCTCTTTGCTGTCTCGGCCTCGTCCCATACTGCTTCGATACATTCAAGGATGCTGAACACTACTGCCCCAATTGTAATACCTTTATTGGTAAAAGTAGCAAGTGTTAA
Protein Sequence
MASNQGPGAGPSAPEDLPPPYSAVVGNPQYGFVAPGGEPYTAPGGPYPQPKQFTAPGVYPHPSITVTNAQPQAGDMPPGGVPVGIVLPPAVGTEPTTTTCFNCGKIVTTRVTYTTAWHTHLVAGSICVITMVCSLCCLGLVPYCFDTFKDAEHYCPNCNTFIGKSSKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01444395; iTF_01222145; iTF_00177752; iTF_01084809; iTF_00301772; iTF_01085978; iTF_01339617; iTF_01340827; iTF_00968483; iTF_01074116; iTF_00622491; iTF_01180830; iTF_01180003; iTF_00300837; iTF_00952385; iTF_00851364; iTF_00974309; iTF_00772556; iTF_00953201; iTF_00112195; iTF_01117927; iTF_01119912; iTF_01118910; iTF_00852357; iTF_00122024; iTF_01027922; iTF_01440662; iTF_01028889; iTF_00274919; iTF_00449795; iTF_00274121; iTF_00037450; iTF_00623690; iTF_01441611; iTF_01527947; iTF_00906732; iTF_00238381; iTF_00071983; iTF_00668111; iTF_00810671; iTF_00758833; iTF_00746386; iTF_00173843; iTF_01247731; iTF_00726997; iTF_00039447; iTF_00374839; iTF_00908473; iTF_00038363; iTF_00375935; iTF_00907551; iTF_01425649; iTF_01535507; iTF_00929249; iTF_00784068; iTF_01231236; iTF_01534468; iTF_00888870; iTF_00044135; iTF_00784876; iTF_01030797; iTF_00041454; iTF_01030798; iTF_01065230; iTF_01533616; iTF_00040465; iTF_01064305; iTF_00712530; iTF_00686010; iTF_01532700; iTF_01063422; iTF_01062431; iTF_00384245; iTF_00000859; iTF_00001674; iTF_00426026; iTF_01361258; iTF_00707530; iTF_00442124; iTF_00823606; iTF_00824380; iTF_00157726; iTF_01198336; iTF_01502635; iTF_00678188; iTF_00932098; iTF_00933260; iTF_00889792; iTF_00121072; iTF_00809731; iTF_01286096; iTF_01076051; iTF_01436692; iTF_01265462; iTF_01173848; iTF_00281946; iTF_00283014; iTF_01333396; iTF_00822556; iTF_00795372; iTF_00327537; iTF_01492561; iTF_01167282; iTF_01152724; iTF_00837144; iTF_00836182; iTF_00870232; iTF_00186809; iTF_01488215; iTF_00185817; iTF_00835225; iTF_00838100; iTF_00637115; iTF_01403131; iTF_01149249; iTF_01147110; iTF_01149248; iTF_01155969; iTF_01147780; iTF_01140614; iTF_01157350; iTF_01495462; iTF_01496207; iTF_01494747; iTF_01116128; iTF_00197799; iTF_01176615; iTF_01144234; iTF_01141321; iTF_01142094; iTF_01143537; iTF_01139346; iTF_01145652; iTF_01144982; iTF_01142809; iTF_01150041; iTF_00195628; iTF_00250138; iTF_00181006; iTF_01130486; iTF_00923291; iTF_01160159; iTF_01158409; iTF_01154705; iTF_00638333; iTF_00405598; iTF_00909431; iTF_00123903;
90% Identity
iTF_00018692;
80% Identity
-