Pazu014809.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000489.1:349144-349746[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-11 5.4e-08 32.7 0.1 4 40 18 53 17 58 0.92
Sequence Information
- Coding Sequence
- ATGCCAAGAGGTAAAAATACTGGTCTTAAACGGCCGATTATAAATATAACAAATATATCTTCAGCTATTGAAGATATCGAGAAAGGAATGACTATTGAAACAGCTGCTAAAAAACATACAATTGCCAAGACAACCTTGTGGAGACATTATAAAAGACACCAACTGTCTAGCCAGTCAACGTGTGTTACCGTTAAAAATCTTGTAAACAATGATAACAAACAAATATTTACGGATGAGGAGGAAATTTTTTTGGCCGAATATATCAAAACACTTGCAAAACTGCAATATGGCCTTGATGGAAATGACATAAGAAAATTTGTTTATCTTATTGCACAAAAAAATAATAAAAATTTGCCAAAAACCTGGATAGAAAACGAATTGGCGGACACGGAATGGTTGGCAGGATTTGTTAAACGACATCCAAGTACACCATTGGAAAAAACCGTAATATCTACTTCAAATAACTCACTACCAAAAATGGATTTTAATGTCATACCTAATAATTTAAATGATTCAATATCCTTATATCTCTTTACCCAAATTTATCACTTAATGAAAGTGACAAATGCTGTTACAGAAAAAACAGCAAATGAAAATAAATAG
- Protein Sequence
- MPRGKNTGLKRPIINITNISSAIEDIEKGMTIETAAKKHTIAKTTLWRHYKRHQLSSQSTCVTVKNLVNNDNKQIFTDEEEIFLAEYIKTLAKLQYGLDGNDIRKFVYLIAQKNNKNLPKTWIENELADTEWLAGFVKRHPSTPLEKTVISTSNNSLPKMDFNVIPNNLNDSISLYLFTQIYHLMKVTNAVTEKTANENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01194321; iTF_01260921; iTF_00331449; iTF_00350107;
- 90% Identity
- iTF_01194321; iTF_01260921;
- 80% Identity
- -