Preg016099.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- -
- Assembly
- GCA_001735585.1
- Location
- MINJ01055183.1:1393-1995[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-11 9.3e-08 32.7 0.1 4 40 18 53 17 58 0.92
Sequence Information
- Coding Sequence
- atgccaAGAGCTAAAAATACTGGCCTAAAACGGCcgattataaatataacaaatatatctTCAGCCATTGAAGATATTGAAAAAGGAATGACTATTGAAACAGCTGCTAAAAAGCATACAATTGCTAAGACAACATTGTGGAGACACTATAAAAGACACCAACTGTCTAGCCAATCAACGTGTGTTGCTGTTAAAAACGTtgtaaacaataacaacaaacaaatatttacggATGAGGAGGAAATTTTTTTGGCCGAATATATCAAGACACTTGCAAAACTGCAATATGGCCTTGATGGAAATGACATAAGAAAATTCGTTTATCTTATtgcgcaaaaaaataataaaactatgcCAAAAACCTGGATAGATAATGAATTGGCGGACTCGGAATGGTTAACGGGATTTGTTAAACGACATCCAAGTACACCATtggaaaaaactataataacaaCTTCAAATAACTCACtaccaaaaatggattttaatgtcataccaaataatttaaatgattctaTATCCTTGTATCTCTTTACACAAATTTATCACTTAATGAAAGTGACAAATGCCGTTACACAAAAAACAGCAAATGAAAATAAGTAG
- Protein Sequence
- MPRAKNTGLKRPIINITNISSAIEDIEKGMTIETAAKKHTIAKTTLWRHYKRHQLSSQSTCVAVKNVVNNNNKQIFTDEEEIFLAEYIKTLAKLQYGLDGNDIRKFVYLIAQKNNKTMPKTWIDNELADSEWLTGFVKRHPSTPLEKTIITTSNNSLPKMDFNVIPNNLNDSISLYLFTQIYHLMKVTNAVTQKTANENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259140;
- 90% Identity
- iTF_01259140;
- 80% Identity
- -