Chom012279.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01002773.1:1290081-1290692[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-11 4.4e-08 32.6 0.1 4 40 18 53 17 58 0.92 2 2 2.8 5.9e+03 -3.0 0.0 33 42 136 145 136 146 0.79
Sequence Information
- Coding Sequence
- atgccAAGAGGTAAAAATACTGGCCTTAAACGgccaataataaatataacaaatatatctTCAGCTATAGAGGATATAGAAAAAGGAATGACTATAGAAACAGCTGCTAAAAAGCATACAATTGCCAAAACAACTTTGTGGAGACATTATAAAAGACACCAATTGTCCAGCCAAACGACATGTGTTGCCATTAAAAATCttgttaacaacaataataacaacaaacaacaaatatttacgGATGAGGAAGAAATCTTCTTAGCAGAATATATTAAAACTCTTGCAAAATTGCAATATGGCCTTGATGGAAATGACATAAGAAAGTTTGTTTATCTAATtgcccaaaaaaataataaaaatataccaaaaagcTGGAGAGAAAATGAATTGGCAGACTCTGAATGGTTGATGAGATTTGTTAAAAGACACCCAAGTACACCATTGAAAAAATCAATAGTAACTGCTACAAATAACTCAATaccaaaaatggaatttaatgtTATACccaataatttaaatgattcaATATCTTTGTATCTTTTCACCCAAATCTATCACTTAATGAAAGTAACAAATGCCGTTACACAAAAAACCGGAAATGAAACTAAGTAG
- Protein Sequence
- MPRGKNTGLKRPIINITNISSAIEDIEKGMTIETAAKKHTIAKTTLWRHYKRHQLSSQTTCVAIKNLVNNNNNNKQQIFTDEEEIFLAEYIKTLAKLQYGLDGNDIRKFVYLIAQKNNKNIPKSWRENELADSEWLMRFVKRHPSTPLKKSIVTATNNSIPKMEFNVIPNNLNDSISLYLFTQIYHLMKVTNAVTQKTGNETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259140;
- 90% Identity
- -
- 80% Identity
- -