Pazu016075.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- Rfx2
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000574.1:707256-725122[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.47 3.3e+03 -1.0 1.7 3 45 52 94 50 100 0.83 2 3 3 2.1e+04 -4.0 0.1 23 32 138 147 125 153 0.70 3 3 4.3e-38 3.1e-34 117.7 0.2 3 78 368 443 366 444 0.97
Sequence Information
- Coding Sequence
- ATGCATTCACGACTAACTTTGGATCAACAGCAGCATTTACATCACCACTTGCAGCATTTAAATCCCTCGACAAATTTTAATCATATTTTTGAAAAGTGTTGTTGTAATATTCGAGCTATAGGTGGTCATCAAAACCAACGACCTCAGCAACATCATCATCATCAGTTAATTCAACAAACGTATCAGGCTTTAACGCCACATCACCATCATCATCACCACCACCATCATCATTACCAGCATCATCACCAACATCACCAAACACACCTGCATCAACAACAATCGTTGAATCAACAGCAACAACAGCAGTTATCTTCACCAGTTTTGTCCGTTTTATCAACAACTCAATCGCAACAAAACCAACACCAGCAGCAACAACAAACACAATCACAAACTAAACAAAATTCTATAGCACATCGTTTGTACCATCAATATCACCATCACCAGACAATCGTTGCTACCGTATCCTCAAGTTGTTCTGCTGTAGCTGCTGCATCTCCATCATCACATTTGACGCTTTCACCTCATCCTGCCCCTACAATTCCATCTGCTCCATCTTCTACAATTTTATCACCAATTCCAGCAACATTACCGGCGACGGCAACAACAATGTATCGACGTCATAACAATTTATCGTATTGTGGTGTTTCAAATCAAGATGCAGGTCAAAACTATCAGGTTCAATACGTGGACACAGATTTGTATCATAGCAATTCAAGCCAATCTCAAATGGCATATCCTTTTTGTCCAATTGGAGATTATCAGACTGGTGGGCAATCTTATTATGCCACAACATCAACAGCAAATTATACTTCAACTTTACCTCTGAACACATCAGCCCATGCATCCACACTGCCATATATAGTGCCGGTGGAGGAGAGCATGCTGTTAAATACATCCTCACAGTCCCATAGCAGAGATTCTCCTCATAGTTTAACTGAAGTTGCATTTATACAAGAAACATCCCAAACACCCACTTCTACAACTGCAAGCTCTGTTAACATCGCAAGTGTTAATATACAGGGAGGAAGTAACACCGGTGGAAGTAACAACTCTCCGGAAAATGACCATAATAATTTAGCGAACTCGAACAAAATTGCTTCAGCAACTATTAAATGGCTTTCACGAAATTACGAAACAGCGGAAGGTGTAAGTTTGCCACGTTCAACATTATATAACCATTATATACAACACTGCAATGAAAGCAAAATAGAACCTGTAAATGCTGCAAGTTTCGGGAAACTAATCCGATCTGTATTTTCCGGACTGAGGACTCGAAGACTTGGTACTCGTGGCAATTCAAAATATCATTACTATGGAATACGTATCAAACCAGAATCTATACTTAATCAAATTCTTGACGAAAAGCCATCATTTCCGTCACAAATATCAAATACTAGTCACATATCACACAACCAAAATCAAAATCCTATGGTACCCTGCAGTTCAAGTCCAATCGCTGGTACATCTAGTACACTACATACAGGTGGCACTAACTCGAACTCTAATAATATCCTTCACAATAGTCGTTATTCCAAAAAAGCACATTCCTTCAAATCGGAAACACATGAATCCTGTGGACAATTTATTGGCGATGGTGCTGGAGCAATACCAACGTTTCCTCCAATTGAACTGGACAACACGTTCGATAGTGAGTTAACTCAGGAGGATGTCGAAGCATTTCGTTCTATGTACCGTGAGCATTGTGAGAATTTTTTGGACGCTGTATTAAATTTAGAATTTAATACAATTGAATTTCTTTGGCGAGATTTTTGGCGTGAAAACAACAGCATAGAAGAGTGTGCCGATGAGGAGAAGTATTTAAATAAAACAAAATTATATTTAATGTGCCACTGTTCGGGGGTTCAAAAGTTTGTGCGAGAGATTGACTACCAATTTTATCAGAATATAGTAGATGTTATCATACCGGATGTTTTAAGATCAATTCCTAATTCTTTGACTCAAGCTATACGTAACTTTGCCAAGAATATGGAAATTTGGTTATGTGAATCTATGATCGGTGTTCCTGAGCGCATGGTACAAATAAAATCGTCAGCCGTGTCAGCATTCTGTCAAACATTACGGCGTTATACATCTCTCAATCATTTGGCTCAAGCAGCCAGAGCAGTTCTCCAAAATAGCGGACAAATAACACAAATGTTGAATGACTTAAATCGTGTAGACTTCCACAATGTCCAGGAACAGGCAGCTTGGGTATGTCAATGCGAACCAGCTATAGTACAGCGGCTAGAAAACGACTTTAAAGCTGCTTTACAACAACAAAGTTCTTTAGAACAATGGGCTGCTTGGTTACAAGTTGTTGTAGACTCAGCTTTGCAAGATTATTGCGGAAAGCCGGGTTATGCGAAAGCTGCTAGACAATTTCTACTAAAATGGAGTTTTTATAGTTCAATGATAATACGAGATTTGACACTCCGATCCGCATCGAGTTTCGGCAGTTTTCACTTAATACGTCTGCTATATGATGAATACATGTTTTACTTGGTCGAACATAAAATCGCTGAAGCCCACCAGAAAACTGCTATTGCAGTTATATGCGATCTAAAGCAGAAAGAAATTGATTTTGATTTTGGCTATCAACTGGGATATATTGCTGCTGATAGTGTTGTCAATGAGCGTGGACCTAAACGAATGAAACATGAATGA
- Protein Sequence
- MHSRLTLDQQQHLHHHLQHLNPSTNFNHIFEKCCCNIRAIGGHQNQRPQQHHHHQLIQQTYQALTPHHHHHHHHHHHYQHHHQHHQTHLHQQQSLNQQQQQQLSSPVLSVLSTTQSQQNQHQQQQQTQSQTKQNSIAHRLYHQYHHHQTIVATVSSSCSAVAAASPSSHLTLSPHPAPTIPSAPSSTILSPIPATLPATATTMYRRHNNLSYCGVSNQDAGQNYQVQYVDTDLYHSNSSQSQMAYPFCPIGDYQTGGQSYYATTSTANYTSTLPLNTSAHASTLPYIVPVEESMLLNTSSQSHSRDSPHSLTEVAFIQETSQTPTSTTASSVNIASVNIQGGSNTGGSNNSPENDHNNLANSNKIASATIKWLSRNYETAEGVSLPRSTLYNHYIQHCNESKIEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPESILNQILDEKPSFPSQISNTSHISHNQNQNPMVPCSSSPIAGTSSTLHTGGTNSNSNNILHNSRYSKKAHSFKSETHESCGQFIGDGAGAIPTFPPIELDNTFDSELTQEDVEAFRSMYREHCENFLDAVLNLEFNTIEFLWRDFWRENNSIEECADEEKYLNKTKLYLMCHCSGVQKFVREIDYQFYQNIVDVIIPDVLRSIPNSLTQAIRNFAKNMEIWLCESMIGVPERMVQIKSSAVSAFCQTLRRYTSLNHLAQAARAVLQNSGQITQMLNDLNRVDFHNVQEQAAWVCQCEPAIVQRLENDFKAALQQQSSLEQWAAWLQVVVDSALQDYCGKPGYAKAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLYDEYMFYLVEHKIAEAHQKTAIAVICDLKQKEIDFDFGYQLGYIAADSVVNERGPKRMKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01194110;
- 90% Identity
- -
- 80% Identity
- -