Preg012447.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- Rfx2
- Assembly
- GCA_001735585.1
- Location
- MINJ01019288.1:1069-8999[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 2.1e+04 -2.8 0.3 11 32 59 80 52 91 0.68 2 2 3.9e-38 4.8e-34 117.8 0.2 3 78 301 376 299 377 0.97
Sequence Information
- Coding Sequence
- ATGCATTCACGACTGACTTTGGATCAACAGCAGCATTTACATCACCACTTGCAGCATTTAAATCCATCgacaaattttaatcatatttttgaaaagtgttGTTGTAATGCTCGTACTATAGTTCTGTCCGTTTTATCAACAACTCAACCACAATCACAACAACACCAACAGCAACATATACaatcacaaaataaacaaaattctattgCCCATCGTTTATACCATCAATATCATCATCACCAGACAGTCGTTGCTACTGTATCCTCAAGTTGTTCTGCTGTAGCTGCTGCATCTCCGTCATCACATTTGACGCTTTCACCTCATCCTGTCCCTACAATTCCATCAGCTCCTTCTTCTGCAATTTTATCACCAATTCCAACAACACTTCCGGCGACGGCATCAACAATGTATCGACGTCACAACAATTTATCGTATTGTGGTGTTTCAAATCAAGATGCAGGCCAAAACTATCAGGTGCAATACGTGGATACAGAGTTGTATCATAGTAATTCAAGCCAATCTCAAATggCATATCCTTTTTGTCCAATCGGAGATTATCAGACTGGTGGGCAATCTTATTATGCCACAACATCCTCAGCAAATTACACTACAACTCTACCTCTGAATACATCAGCACATGCATCCACCCTGCCATATATAGTACCGGTGGAAGAAAGCATGCTATTAACTACAACATCACAGTCCCATAGCAGAGATTCTCCTCATAGTTTAACTgAAGTTGCATTTATACAAGAAACATCGCAAACACCTACCTCTACAACTACAAACTCTGTTAACATTGGAAGTGTTAATATACAGGGAGGAAGTAACACCAGTGGAGGTAACAACTCTCCGGAACATGACCATAACAATTTGGCGAATTCGAACAAAATTGCTTCAGCAACTaTTAAATGGCTTTCACGGAATTATGAGACAGCAGAAGGTGTAAGTTTGCCACGTTCAACGTTATACAACCATTACATACAACACTGCAACGAAAGTAAAATTGAACCTGTAAATGCTGCTAGTTTTGGTAAACTAATCCGATCCGTATTTTCCGGTCTTAGGACTCGGAGACTTGGTACTCGTGGTAACTCAAAATATCATTACTATGGCATACGTATCAAACCAGAATCTATACTTAATCAAATTCTTGACGAAAAGCCATCATTTCCAGCACAACAAATATCTAATGCAGTTCACATTTCCcataatcaaaatcaaaatcctATGGTACCTTGCAGTTCAAGTCCAATCGCCGGTACATCAAGTACGCTACATTCAATTGGCAATAATCCTAACTCTAGCAATATCCTCCACAATGTTCGTTATTCCAAAAAAGCCCATTCATTTAAATCGGAAACACATGAATCGTGTGGACaatTTCTTGGCGATGGTACTGGAGCGATACCAACGTTTCCTCCAATTGAACTGGACAACACGTTCGATAGTGAATTAACTCAAGAGGATGTCGAAGCATTTCGTTCGATGTACCGTGAGCATTGTGAGAATTTTTTGGACGCTGTATTAAACTTAGAATTTAATACAATAGAATTTCTATGGCGCGATTTCTGGCGTGAAAACAATACTATGGAAGAGTGTGCCGATGaggagaaatatttaaataaaacaaaattatacttaatGTGCCACTGTTCAGGTGTCCAAAAGTTTGTGCGTGAGATTGACTATCAATTTTATCAAAACATAGTAGATGTCATCATACCCGATGTCTTAAGATCAATTCCTAATTCTTTGACTCAAGCAATAcgtaattttgcaaaaaatatggaaatttggTTATGTGAATCGATGGTCGGTGTTCCTGAGCGAATGGTACAAATAAAATCATCAGCTGTGTCGGCATTCTGCCAAACACTACGTCGTTATACATCACTCAATCATTTGGCTCAAGCAGCCAGAGCAGTTCTTCAAAATAGTGGACAAATAACACAAATGTTGAATGATTTAAATCGTGTAGACTTTCACAATGTCCAGgaaCAGGCAGCTTGGGTATGTCAATGCGAACCAGCTATAGTACAGCGTCTAGAAAACGACTTCAAGTCTGCTTTACAACAACAAAGTTCTTTAGAACAATGGGCTGCTTGGTTACAAGTTGTTGTAGATTCAGCTTTGCAAGATTATTGCGGAAAGCCGGGCTATGCAAAAGCTGCTAGACAATTTCTACTAAAATGGAGTTTTTACAGTTCAATGATAATACGAGATTTGACACTACGATCCGCATCGAGTTTCGGTAGCTTTCACTTAATACGTCTACTATATGATGAATACATGTTTTACCTGGTCGAACATAAAATCGCTGAAGCCCATCAGAAAACTGCTATTGCAGTTATTTGCGATCTtaagcAAAAAGATATGGAATTTGATTTTGGCTACCAACTGGAATATATTGCTGCAGAAAGTGTTGTCAATGAGCGCGGATCTAAACGAATG
- Protein Sequence
- MHSRLTLDQQQHLHHHLQHLNPSTNFNHIFEKCCCNARTIVLSVLSTTQPQSQQHQQQHIQSQNKQNSIAHRLYHQYHHHQTVVATVSSSCSAVAAASPSSHLTLSPHPVPTIPSAPSSAILSPIPTTLPATASTMYRRHNNLSYCGVSNQDAGQNYQVQYVDTELYHSNSSQSQMAYPFCPIGDYQTGGQSYYATTSSANYTTTLPLNTSAHASTLPYIVPVEESMLLTTTSQSHSRDSPHSLTEVAFIQETSQTPTSTTTNSVNIGSVNIQGGSNTSGGNNSPEHDHNNLANSNKIASATIKWLSRNYETAEGVSLPRSTLYNHYIQHCNESKIEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPESILNQILDEKPSFPAQQISNAVHISHNQNQNPMVPCSSSPIAGTSSTLHSIGNNPNSSNILHNVRYSKKAHSFKSETHESCGQFLGDGTGAIPTFPPIELDNTFDSELTQEDVEAFRSMYREHCENFLDAVLNLEFNTIEFLWRDFWRENNTMEECADEEKYLNKTKLYLMCHCSGVQKFVREIDYQFYQNIVDVIIPDVLRSIPNSLTQAIRNFAKNMEIWLCESMVGVPERMVQIKSSAVSAFCQTLRRYTSLNHLAQAARAVLQNSGQITQMLNDLNRVDFHNVQEQAAWVCQCEPAIVQRLENDFKSALQQQSSLEQWAAWLQVVVDSALQDYCGKPGYAKAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLYDEYMFYLVEHKIAEAHQKTAIAVICDLKQKDMEFDFGYQLEYIAAESVVNERGSKRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01260738; iTF_01258967; iTF_01397068; iTF_01236399; iTF_01235461; iTF_01237397; iTF_00331288;
- 90% Identity
- iTF_01260738;
- 80% Identity
- -