Basic Information

Insect: Prosopocoilus inquinatus
Gene Symbol: -
Assembly: GCA_036172665.1
Location: CM069876.1:49447236-49452421[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.8 1.1e+03 0.8 0.0 18 31 64 77 57 93 0.79

2 15 5.7 3.4e+03 -0.8 0.0 25 44 126 145 118 149 0.82

3 15 0.024 14 6.8 0.1 18 48 147 176 133 181 0.81

4 15 1.1 6.8e+02 1.5 0.2 21 44 178 201 175 208 0.87

5 15 0.1 59 4.8 0.1 26 47 214 235 206 240 0.84

6 15 0.35 2e+02 3.1 0.2 21 47 237 262 234 265 0.87

7 15 0.0094 5.6 8.1 0.0 21 46 265 290 260 296 0.86

8 15 0.36 2.1e+02 3.1 0.0 21 43 293 315 290 321 0.91

9 15 3.2 1.9e+03 0.0 0.1 27 45 349 367 343 374 0.81

10 15 0.22 1.3e+02 3.7 0.3 21 49 371 398 369 404 0.88

11 15 0.0045 2.7 9.2 0.1 9 47 415 453 410 458 0.82

12 15 0.11 64 4.7 0.0 21 47 455 481 452 487 0.85

13 15 1.4 8e+02 1.2 0.0 21 47 483 509 480 518 0.80

14 15 0.23 1.4e+02 3.7 0.2 14 52 532 570 522 573 0.85

15 15 1.4 8.6e+02 1.1 0.2 20 48 594 621 579 626 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.8	1.1e+03	0.8	0.0	18	31	64	77	57	93	0.79
2	15	5.7	3.4e+03	-0.8	0.0	25	44	126	145	118	149	0.82
3	15	0.024	14	6.8	0.1	18	48	147	176	133	181	0.81
4	15	1.1	6.8e+02	1.5	0.2	21	44	178	201	175	208	0.87
5	15	0.1	59	4.8	0.1	26	47	214	235	206	240	0.84
6	15	0.35	2e+02	3.1	0.2	21	47	237	262	234	265	0.87
7	15	0.0094	5.6	8.1	0.0	21	46	265	290	260	296	0.86
8	15	0.36	2.1e+02	3.1	0.0	21	43	293	315	290	321	0.91
9	15	3.2	1.9e+03	0.0	0.1	27	45	349	367	343	374	0.81
10	15	0.22	1.3e+02	3.7	0.3	21	49	371	398	369	404	0.88
11	15	0.0045	2.7	9.2	0.1	9	47	415	453	410	458	0.82
12	15	0.11	64	4.7	0.0	21	47	455	481	452	487	0.85
13	15	1.4	8e+02	1.2	0.0	21	47	483	509	480	518	0.80
14	15	0.23	1.4e+02	3.7	0.2	14	52	532	570	522	573	0.85
15	15	1.4	8.6e+02	1.1	0.2	20	48	594	621	579	626	0.84

Sequence Information

Coding Sequence: ATGTCGGACCGCAAATCCGActcgcacaccggcgagaagcagTTCAGCTGCGacgtttgcgattacaaatgtcgtCTGCTCGTAATCTTGCAACACCACAAGCTGAAGCACACCGACGAAAAGCCGTTCATCTGCGAGTTTTGCGGTTATAAATTCCGTAGCCTCGCGATCCTCAACCAGCACAAGTTAAGGCACGCCGACGAGAATCCGTTCACTTGCGACCTCTGCGATTTCAAGTGTCACGACGCCGCGTTTCTCAACCAGCACAAGCTGGTGCACGTCGAGGAGACGTACAGCTGTGACCTCTGCGATTTCTCGAGCCAGCGGGTCGAAAGCTTCAACCTGCACAAGTTGAGGCACGCCGACGACAAGTCGTACATTTGCGGCCTGTGCTACTACAAGAGCCAGCACCACGGAAACTTCAAGAAGCACATGTTtaaacacaccggcgagaagccgttcgcttgcgacgtctgcgattataagtgccgagaCGCTACGAGTCTGAAGCGGCACAAACTGAAGCACACCGACgaaaaaccgttcagttgtgatttcTGTGATTATAAATGCAGACAGCTCGGGAGCCTGAAGCAGCATAGGCGTCAACGTCTCCCCTGCACCGACAAAGAAACGTTCGAGTGCGGGATATGCGACTCCAAATTAAAATCTCGCGCGAACTTGCGCAATCATCTCTtcatacacaccggcgagaagccgctggcttgtgatctctgcgattacaagtgcagGCACCTCGCAAACCTGAAACAGCACAAGCTGAAGcacgccgacgagaagccgttcagctgcgacCTATGCGATCATAAATCCCGACAGGTCGGTAATCTGAAGAAGCACATCTTGATACACgcgggcgagaagccgttcggttgcgaactctgcgattataagtgccgggACAGCGGCACTCTGAACCGGCACAAGGTGACGCACGCCGAAGAGAAATCGGTCAGCTGCGTTttctgcgattacaagtgtcgATGTGAACCCAAAACCGTGAACGGAAAAGCGGCGTTCCAATGCGGGGGTTGCAATGCTAAGTTTAAATCCCGCGCGAACCTGCACAGGCACACcttgatacacaccggcgagaagccgttcagttgcgacgtatgcgattacaagtgccgacaGCTCGTGCACCTGAATCAGCACAAGCTGAGGCACACGGACGAGAAGCCGTTGGGCTGCGACCTCTGCGATTTCAAGTGCCGAAATCCGTCGAGCTTGAAGGAGCACAGGCAGAAGCAcacgggcgagaagccgttcgcttgCGGCATTTGCGATCAAAAGTTCCGAAAGCACAGCACCTTGAAAAATCACTTGCTggtgcacaccggcgagaagccgttcagctgcgacGTGTGCGAGTACAAGTGCCGTCGCAGCGGCGAACTGAAGGTGCACATGTTGATGCACGCGGGCGAGAAGCCCTTCGCTTGCGGGCTCTGCGATTACAGCAGCCGAAGGTACGGCGATTTGAAAGCGCACATGTCGATACACGTCGACTTGAAGCCGTTCGCTTGTGAGCTTTGCGATTATAGGTGTCGGAACGCCGGGCGCCTGAAGAAACACAGGCTGAcgcacaccgatgagaagccgttcggttgcgatctctgcgattacagCAGCCGAAGGTGCGGCGATTTGAAAGCGCACATGTCGATACACACCGACTgcaagccgttcggttgtgagcTCTGCGATTATAGGTGCCGGAACGCCGGGTACCTGAAGAAACATAAGCTGAcgcacaccgatgagaagccgttcggttgcgatctctgcgattataagtgtcgaCGACTCGGACACCTGAAGCAGCACAAGCTGAGACACACTGACGAGAAGCCGCTGCTTTATTAA
Protein Sequence: MSDRKSDSHTGEKQFSCDVCDYKCRLLVILQHHKLKHTDEKPFICEFCGYKFRSLAILNQHKLRHADENPFTCDLCDFKCHDAAFLNQHKLVHVEETYSCDLCDFSSQRVESFNLHKLRHADDKSYICGLCYYKSQHHGNFKKHMFKHTGEKPFACDVCDYKCRDATSLKRHKLKHTDEKPFSCDFCDYKCRQLGSLKQHRRQRLPCTDKETFECGICDSKLKSRANLRNHLFIHTGEKPLACDLCDYKCRHLANLKQHKLKHADEKPFSCDLCDHKSRQVGNLKKHILIHAGEKPFGCELCDYKCRDSGTLNRHKVTHAEEKSVSCVFCDYKCRCEPKTVNGKAAFQCGGCNAKFKSRANLHRHTLIHTGEKPFSCDVCDYKCRQLVHLNQHKLRHTDEKPLGCDLCDFKCRNPSSLKEHRQKHTGEKPFACGICDQKFRKHSTLKNHLLVHTGEKPFSCDVCEYKCRRSGELKVHMLMHAGEKPFACGLCDYSSRRYGDLKAHMSIHVDLKPFACELCDYRCRNAGRLKKHRLTHTDEKPFGCDLCDYSSRRCGDLKAHMSIHTDCKPFGCELCDYRCRNAGYLKKHKLTHTDEKPFGCDLCDYKCRRLGHLKQHKLRHTDEKPLLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258397;
90% Identity: iTF_01258397;
80% Identity: iTF_01258397;