Pinq024282.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:47565843-47573146[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0075 4.4 8.5 0.1 14 51 140 177 136 180 0.87 2 20 2.7 1.6e+03 0.3 0.3 22 44 204 226 191 235 0.83 3 20 0.099 58 4.9 0.5 23 45 233 255 229 263 0.84 4 20 3.4 2e+03 -0.1 0.1 21 46 259 284 256 287 0.87 5 20 0.11 65 4.7 0.5 13 44 288 319 277 327 0.83 6 20 0.054 32 5.7 0.0 23 46 326 349 321 356 0.83 7 20 1.1 6.8e+02 1.5 0.0 22 47 353 378 350 383 0.77 8 20 2.1 1.3e+03 0.6 0.1 22 44 392 414 388 421 0.84 9 20 4.4 2.6e+03 -0.4 0.1 21 44 419 442 416 448 0.77 10 20 0.041 24 6.1 0.9 23 49 449 475 444 479 0.87 11 20 1.1 6.4e+02 1.5 0.0 21 44 511 534 502 542 0.85 12 20 0.46 2.7e+02 2.7 0.2 7 46 525 564 522 571 0.81 13 20 4.8 2.8e+03 -0.5 0.1 22 43 568 589 565 593 0.77 14 20 0.00081 0.48 11.5 0.4 7 44 581 618 577 622 0.86 15 20 0.044 26 6.0 0.1 21 44 623 646 620 654 0.89 16 20 5.3 3.1e+03 -0.7 0.0 23 46 653 676 648 682 0.75 17 20 0.86 5.1e+02 1.9 0.1 21 48 679 705 676 709 0.90 18 20 0.17 99 4.1 0.3 22 44 715 737 707 742 0.89 19 20 0.0098 5.8 8.1 0.0 21 46 742 767 738 773 0.85 20 20 1.8 1e+03 0.9 0.0 21 48 770 797 767 798 0.91
Sequence Information
- Coding Sequence
- ATGGTGAATCGAGCGCCCCGTTTCATCCCGAATTGGAATCTCATCGAGCAGCTCGAGAACTCCACCGCAATCTCACCGTTTTTGCGCTTGGGTCTTGGTTACCATGTTTCATGTGAACGACTTTCCAAAGCTACAATCAAAGAAGAAACATTTGAATGTCACACGTGTGGCTTCGGATTTAAATCCGACGAGGATATACGGAAACACGTGCTGATGCACGCCGGCGAGAAGCTGTACAGATGCGTTCTCTGCGGCAGGAAGTTCGAAGACCCCGACAAACTGAAGCGGCACGTGTTgacacacaccggcgagaagttGCTCGGCTGCGAACTTTGCGGCTACGGCGCGTCTACGCAGGCAGATTTGGACGAGCACGTGTCAACACATACCGGAGAGGGGCAGTTCAGTTGTGATCATAAATCCAGAAGGGCTAGCGACtttgagaagccgttcagttgtgattttTGCGGTCGAATGTATCGACTTCGCAAGTCGCTGAAAAAACACATGTTACTGCACGCCGATAGGAAACCGCTCGCTTGTAACCTGTGCGATTACGTGTGCAAAGACCCCATCGTTTTAAAAGCGCACAAGCTCACTCATTCCGGTGATAAGCCGTTACGCTGTGGCATTtgtgattataaatgccgacgacGCTTCAGTTTGAAACAGCACGTTCTAACACACACCGACGTTAAGCCGTACAGTTGCACCCACTGCGATTTGAAATTCAAACAGTCCTGTCATCTGCGACGCCATACCTTGATACAcacgggcgagaagccgttcagttgtggcTCTTGCCGGTACAGATGTCGCTCTAACGGGGATTTGAAAAAACACATCACGTCATGCCACGCCGAAAATAAACGCCAAGAGGCGCCGGAAGAGAAGTCGATCGGCTGCGGTCTTTGCGATTTCCGGTGCAGGAAGCCGGCGAATCTGAGACAGCATATGTTGACACATTCCGACAGGAAGCCGTACGGGTGTAAATTTTGCGATTCCGCGTTCCGACAGTCCGGCCATTTGAAGACTCACATGTTGGTGCACACcggtgagaagccgttcagttgcggcTTTTGCGAGTACAAGTGCGGAACTAACTCAAGGTTGAAGAAGCACGTGGAACTGCACGCCGGCGACAAACGCCAAGAAGTTGTGGAaaggaagaaggaaaagaaattcCGTTGCGGTCTTTGCGATTACGGGTGCAGAAGGGCGACGGATTTGAAACGGCACGTGTTAACGCACTCCAGCGAGAAGTCCTTCGGTTGTGATATTTGCGATTATACGTCTCGACGACGCATGCATTTGAAACTGCATATGTTAACACACGCCGACCATAAGCCGCACCGTTGTGCCCACTGCGATTCTAAATTCAAGCAGTCTTGTCATCTGAAACGCCATATATATCTCGATTACTTACAAAAACTAACgctgaaaagagaaaagaagttGGCCGTCTGCGACAGTTGTGATTATAAATCCGGCGATTCCAACAAAGTGAAACGCCACCAgttaacacacaccggcgagaagccgttcggctgTGATATTTGCGATTTCAAGTGCCGAGATCCGAGCGGTTTAAAAAAGCACAAGCTGGTTCATTCCGACGATAAGCCGATAATCTGTGGTCTTTGCGATTACCAATGTCGACGACTGGAAAGATTGAAGCAGCACATGCTGATGCACCTCGGCGAGAAGCCTTTCAGCTGTGGTATTTGCGATTTCAAGTGCCGAGACCCTAGCGGTTTAATAAAACACAAGCTGACTCACACCGGCGATAGGCCGATAAGTTGTgctctttgcgattacaaatgtcgaCAGCTCCAGAATTTGAAACGTCACATgctaatacacaccggcgagagacCTCTCGGCTGTGACGTTTGCGATTTCAAGTGCCGGGATCGCAGCAATTTGAAACGACACAAGCTCATGCACACCGGTGAGAAGTCGTTCGGTTGTGACCTGTGCGATTCGAAATTCGGGCGGCTGAGTCATCTGCGACGCCATatgttaatacacaccggcgagaagccgttcagttgtagCTTTTGCGAGTACAGATGTCGATTTAACGGAGATTTGAAGAAGCACATGTTACGACACGCCGATAACAAGCTCCAAGGTGCGAGGCAGAAGCCGATCGGTTGCAGCCTTTGCGATTTCAAGTGCAGGAGGCTGACGAATTTGAGGCAGCATATGCTGACGCATtccgacgagaagccgtacgGTTGCAAGCTTTGCGATTCGGCGTTCAGACAATCTGGCCATTTGAAGTATCACATGTTggtacacaccggcgagaaaccctTCAGTTGCGATTCTTGCGGGCACAAGTTCCGATCCGACGGAGATTTGAAAAAGCACGTCAAAGCCCACCATTCatag
- Protein Sequence
- MVNRAPRFIPNWNLIEQLENSTAISPFLRLGLGYHVSCERLSKATIKEETFECHTCGFGFKSDEDIRKHVLMHAGEKLYRCVLCGRKFEDPDKLKRHVLTHTGEKLLGCELCGYGASTQADLDEHVSTHTGEGQFSCDHKSRRASDFEKPFSCDFCGRMYRLRKSLKKHMLLHADRKPLACNLCDYVCKDPIVLKAHKLTHSGDKPLRCGICDYKCRRRFSLKQHVLTHTDVKPYSCTHCDLKFKQSCHLRRHTLIHTGEKPFSCGSCRYRCRSNGDLKKHITSCHAENKRQEAPEEKSIGCGLCDFRCRKPANLRQHMLTHSDRKPYGCKFCDSAFRQSGHLKTHMLVHTGEKPFSCGFCEYKCGTNSRLKKHVELHAGDKRQEVVERKKEKKFRCGLCDYGCRRATDLKRHVLTHSSEKSFGCDICDYTSRRRMHLKLHMLTHADHKPHRCAHCDSKFKQSCHLKRHIYLDYLQKLTLKREKKLAVCDSCDYKSGDSNKVKRHQLTHTGEKPFGCDICDFKCRDPSGLKKHKLVHSDDKPIICGLCDYQCRRLERLKQHMLMHLGEKPFSCGICDFKCRDPSGLIKHKLTHTGDRPISCALCDYKCRQLQNLKRHMLIHTGERPLGCDVCDFKCRDRSNLKRHKLMHTGEKSFGCDLCDSKFGRLSHLRRHMLIHTGEKPFSCSFCEYRCRFNGDLKKHMLRHADNKLQGARQKPIGCSLCDFKCRRLTNLRQHMLTHSDEKPYGCKLCDSAFRQSGHLKYHMLVHTGEKPFSCDSCGHKFRSDGDLKKHVKAHHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258307;
- 90% Identity
- iTF_01258307;
- 80% Identity
- iTF_01258307;