Pinq024282.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:47565843-47573146[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.002 0.12 13.8 1.1 1 23 51 73 51 73 0.98
2 25 4.5e-06 0.00028 22.1 0.4 1 23 79 101 79 101 0.99
3 25 0.11 6.6 8.3 0.0 3 23 109 129 109 129 0.99
4 25 0.00012 0.0075 17.6 2.2 1 23 151 173 151 173 0.97
5 25 0.0084 0.53 11.8 0.3 3 23 181 201 179 201 0.96
6 25 0.0011 0.069 14.6 3.3 2 23 208 229 207 229 0.97
7 25 0.00089 0.055 14.9 9.0 1 23 235 257 235 257 0.98
8 25 0.095 5.9 8.5 5.9 1 23 263 286 263 286 0.96
9 25 0.0014 0.09 14.2 2.2 3 23 302 322 302 322 0.99
10 25 0.00017 0.011 17.1 1.6 3 23 330 350 328 350 0.97
11 25 0.13 8.3 8.0 3.0 1 23 356 378 356 378 0.96
12 25 0.00014 0.0089 17.4 1.7 1 23 395 417 395 417 0.98
13 25 0.00033 0.021 16.2 2.2 3 23 425 445 423 445 0.98
14 25 0.025 1.6 10.3 7.1 1 20 451 470 451 472 0.95
15 25 0.15 9.4 7.9 0.7 2 23 488 509 488 509 0.97
16 25 0.0013 0.08 14.4 1.4 3 23 517 537 515 537 0.97
17 25 0.0081 0.5 11.9 1.3 3 23 545 565 543 565 0.96
18 25 0.00025 0.015 16.6 1.3 1 23 571 593 571 593 0.98
19 25 0.00034 0.021 16.2 1.8 2 23 600 621 599 621 0.96
20 25 0.002 0.12 13.8 4.3 3 23 629 649 629 649 0.98
21 25 0.0003 0.019 16.3 1.6 3 23 657 677 655 677 0.97
22 25 0.0031 0.2 13.1 5.0 1 23 683 705 683 705 0.98
23 25 0.0041 0.26 12.8 4.8 3 23 720 740 720 740 0.99
24 25 0.00026 0.016 16.6 1.1 3 23 748 768 746 768 0.97
25 25 0.0018 0.11 13.9 3.5 1 23 774 796 774 797 0.95

Sequence Information

Coding Sequence
ATGGTGAATCGAGCGCCCCGTTTCATCCCGAATTGGAATCTCATCGAGCAGCTCGAGAACTCCACCGCAATCTCACCGTTTTTGCGCTTGGGTCTTGGTTACCATGTTTCATGTGAACGACTTTCCAAAGCTACAATCAAAGAAGAAACATTTGAATGTCACACGTGTGGCTTCGGATTTAAATCCGACGAGGATATACGGAAACACGTGCTGATGCACGCCGGCGAGAAGCTGTACAGATGCGTTCTCTGCGGCAGGAAGTTCGAAGACCCCGACAAACTGAAGCGGCACGTGTTgacacacaccggcgagaagttGCTCGGCTGCGAACTTTGCGGCTACGGCGCGTCTACGCAGGCAGATTTGGACGAGCACGTGTCAACACATACCGGAGAGGGGCAGTTCAGTTGTGATCATAAATCCAGAAGGGCTAGCGACtttgagaagccgttcagttgtgattttTGCGGTCGAATGTATCGACTTCGCAAGTCGCTGAAAAAACACATGTTACTGCACGCCGATAGGAAACCGCTCGCTTGTAACCTGTGCGATTACGTGTGCAAAGACCCCATCGTTTTAAAAGCGCACAAGCTCACTCATTCCGGTGATAAGCCGTTACGCTGTGGCATTtgtgattataaatgccgacgacGCTTCAGTTTGAAACAGCACGTTCTAACACACACCGACGTTAAGCCGTACAGTTGCACCCACTGCGATTTGAAATTCAAACAGTCCTGTCATCTGCGACGCCATACCTTGATACAcacgggcgagaagccgttcagttgtggcTCTTGCCGGTACAGATGTCGCTCTAACGGGGATTTGAAAAAACACATCACGTCATGCCACGCCGAAAATAAACGCCAAGAGGCGCCGGAAGAGAAGTCGATCGGCTGCGGTCTTTGCGATTTCCGGTGCAGGAAGCCGGCGAATCTGAGACAGCATATGTTGACACATTCCGACAGGAAGCCGTACGGGTGTAAATTTTGCGATTCCGCGTTCCGACAGTCCGGCCATTTGAAGACTCACATGTTGGTGCACACcggtgagaagccgttcagttgcggcTTTTGCGAGTACAAGTGCGGAACTAACTCAAGGTTGAAGAAGCACGTGGAACTGCACGCCGGCGACAAACGCCAAGAAGTTGTGGAaaggaagaaggaaaagaaattcCGTTGCGGTCTTTGCGATTACGGGTGCAGAAGGGCGACGGATTTGAAACGGCACGTGTTAACGCACTCCAGCGAGAAGTCCTTCGGTTGTGATATTTGCGATTATACGTCTCGACGACGCATGCATTTGAAACTGCATATGTTAACACACGCCGACCATAAGCCGCACCGTTGTGCCCACTGCGATTCTAAATTCAAGCAGTCTTGTCATCTGAAACGCCATATATATCTCGATTACTTACAAAAACTAACgctgaaaagagaaaagaagttGGCCGTCTGCGACAGTTGTGATTATAAATCCGGCGATTCCAACAAAGTGAAACGCCACCAgttaacacacaccggcgagaagccgttcggctgTGATATTTGCGATTTCAAGTGCCGAGATCCGAGCGGTTTAAAAAAGCACAAGCTGGTTCATTCCGACGATAAGCCGATAATCTGTGGTCTTTGCGATTACCAATGTCGACGACTGGAAAGATTGAAGCAGCACATGCTGATGCACCTCGGCGAGAAGCCTTTCAGCTGTGGTATTTGCGATTTCAAGTGCCGAGACCCTAGCGGTTTAATAAAACACAAGCTGACTCACACCGGCGATAGGCCGATAAGTTGTgctctttgcgattacaaatgtcgaCAGCTCCAGAATTTGAAACGTCACATgctaatacacaccggcgagagacCTCTCGGCTGTGACGTTTGCGATTTCAAGTGCCGGGATCGCAGCAATTTGAAACGACACAAGCTCATGCACACCGGTGAGAAGTCGTTCGGTTGTGACCTGTGCGATTCGAAATTCGGGCGGCTGAGTCATCTGCGACGCCATatgttaatacacaccggcgagaagccgttcagttgtagCTTTTGCGAGTACAGATGTCGATTTAACGGAGATTTGAAGAAGCACATGTTACGACACGCCGATAACAAGCTCCAAGGTGCGAGGCAGAAGCCGATCGGTTGCAGCCTTTGCGATTTCAAGTGCAGGAGGCTGACGAATTTGAGGCAGCATATGCTGACGCATtccgacgagaagccgtacgGTTGCAAGCTTTGCGATTCGGCGTTCAGACAATCTGGCCATTTGAAGTATCACATGTTggtacacaccggcgagaaaccctTCAGTTGCGATTCTTGCGGGCACAAGTTCCGATCCGACGGAGATTTGAAAAAGCACGTCAAAGCCCACCATTCatag
Protein Sequence
MVNRAPRFIPNWNLIEQLENSTAISPFLRLGLGYHVSCERLSKATIKEETFECHTCGFGFKSDEDIRKHVLMHAGEKLYRCVLCGRKFEDPDKLKRHVLTHTGEKLLGCELCGYGASTQADLDEHVSTHTGEGQFSCDHKSRRASDFEKPFSCDFCGRMYRLRKSLKKHMLLHADRKPLACNLCDYVCKDPIVLKAHKLTHSGDKPLRCGICDYKCRRRFSLKQHVLTHTDVKPYSCTHCDLKFKQSCHLRRHTLIHTGEKPFSCGSCRYRCRSNGDLKKHITSCHAENKRQEAPEEKSIGCGLCDFRCRKPANLRQHMLTHSDRKPYGCKFCDSAFRQSGHLKTHMLVHTGEKPFSCGFCEYKCGTNSRLKKHVELHAGDKRQEVVERKKEKKFRCGLCDYGCRRATDLKRHVLTHSSEKSFGCDICDYTSRRRMHLKLHMLTHADHKPHRCAHCDSKFKQSCHLKRHIYLDYLQKLTLKREKKLAVCDSCDYKSGDSNKVKRHQLTHTGEKPFGCDICDFKCRDPSGLKKHKLVHSDDKPIICGLCDYQCRRLERLKQHMLMHLGEKPFSCGICDFKCRDPSGLIKHKLTHTGDRPISCALCDYKCRQLQNLKRHMLIHTGERPLGCDVCDFKCRDRSNLKRHKLMHTGEKSFGCDLCDSKFGRLSHLRRHMLIHTGEKPFSCSFCEYRCRFNGDLKKHMLRHADNKLQGARQKPIGCSLCDFKCRRLTNLRQHMLTHSDEKPYGCKLCDSAFRQSGHLKYHMLVHTGEKPFSCDSCGHKFRSDGDLKKHVKAHHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01258885;
90% Identity
iTF_01258885;
80% Identity
iTF_01258885;