Pinq024430.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49541390-49542883[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00024 0.14 13.2 0.2 17 49 32 64 22 68 0.84 2 10 0.92 5.4e+02 1.8 0.0 26 45 76 95 71 98 0.87 3 10 1.4 8.2e+02 1.2 0.1 22 47 99 124 95 131 0.80 4 10 0.3 1.8e+02 3.3 0.2 26 48 135 156 125 160 0.81 5 10 1.6 9.6e+02 1.0 0.0 26 48 197 219 191 224 0.79 6 10 0.0079 4.7 8.4 0.1 21 52 253 283 249 285 0.82 7 10 9.8 5.8e+03 -1.5 0.0 26 48 293 315 287 320 0.78 8 10 0.0059 3.5 8.8 0.0 18 47 341 370 338 375 0.89 9 10 0.21 1.2e+02 3.8 0.0 16 44 395 423 384 427 0.81 10 10 0.058 34 5.6 0.2 20 48 455 483 438 488 0.86
Sequence Information
- Coding Sequence
- ATGCGAATCGGCAAGGCGCCCCTCACTCGGATGTTCGCGTGCGATCGCTGCGATTACGCGACGAACCGCGCCGACACTCTCAAGAAGCACGCCCTgagacacaccggcgagaaaccgcaCGAATGCAAGCTGTGCGACTACAAGTGCATCGTGTCCGCGAACCTGGAGCGCCACATGAGGGTGCGCCACCTCAAGTTGAAGGGCGAAGGGGGCGAATTCGAATTCGCCTGCGAGATCTGCGAGTTTAAGACGACGCAAGCCGATTACCTGCGGAAGCACATGAAGAGACACGGCGATCAGCAGTTCGCCTGCGGACTCTGCGATTACAAGAGCTCCGTCTCCATCAACTTCACCAGGCACATGAGTTTGCATCGCGCCAAAGAGAAACCCAAATGCGAGTTCTCCTGCAAGGTCTGCGAGTTTAAGACGACGCAAGCCGATTACCTGAGGAGACACATGAAGAGGCATGGTAACAAACAGCTGGCTTGCGAACAGTGCGATTTCAAGTGCGTCGCCTCCGAAACCTTCAAGCGGCACATGATGAAGCACTCGGCGAACGAAACGGGGGAGGAATTCGAGCTTGAGTTCGCCTGTGACGTCTGCAGCTTTAAAACGAATCAAGCCGCGTACCTGAGCAGGCACATGAAGCGACACAACAGCGATAAGCCCGACAATTGCGTGTGGCGCAAGTGCGATCACTGCGATTATAAAACGAACCGCAGCGACAGTCTTAAGAATCACATGCTCAcccacaccggcgagaagccgcaCGCCTGCAAGTTGTGCAGTTATAGTTGCATCACGTCCGGGAAACTCAAGCGACACTTGAAGACGCACATGGCGAAGGAGAAGGTCCAGGAGGCCGACAAGAAATTCATGTGCGACGTCTGCAGTTTTAAAACGACGACCGCCAAGTACCTGAGGAATCACATGACGGTGCACAGCGGCGAGAAGCCCTTCCAGTGCGATCGCTGCGGCGATAAGTTCGCCTCGAATATAATCCTGAAAATGCACATAATGCGACACACCGGGGAGAAACCGTACGAGTGCAACATCTGCGGCTACAAGTGCAGCCAGAACGGAACGCTGAAGCGCCACCTTATCCTACACACCGGCATAAAAACCTTCCAATGCAGCAAGTGCGATTACAGGGCCGCCGTCAAGGGCACGCTCGCCAAGCACATGGCCAAGCATTCCACGGAGAAACCGTTCGCGTGCAACATCTGCAGCCACAAGACGAAAACGGCGAAGCTTCTGAAAAGCCACATGATATCGCACACCGGCGAGCAGCAGTATAAATGCAACGTCTGCGACAAGCGATTCTCGCGTTACAAGGGCATGAAGAAACACATGTTGATACACACGGGCGAGAAGCCGTACGCGTGTAACTTGTGCGATTACAGGTCCACCCAGAAGTCGAACGTTAAAATACACATGAAGCACAGACACAAGGAATTCAACGCGGTTACCGCAAGTAAAATCGAAGCAACTTGA
- Protein Sequence
- MRIGKAPLTRMFACDRCDYATNRADTLKKHALRHTGEKPHECKLCDYKCIVSANLERHMRVRHLKLKGEGGEFEFACEICEFKTTQADYLRKHMKRHGDQQFACGLCDYKSSVSINFTRHMSLHRAKEKPKCEFSCKVCEFKTTQADYLRRHMKRHGNKQLACEQCDFKCVASETFKRHMMKHSANETGEEFELEFACDVCSFKTNQAAYLSRHMKRHNSDKPDNCVWRKCDHCDYKTNRSDSLKNHMLTHTGEKPHACKLCSYSCITSGKLKRHLKTHMAKEKVQEADKKFMCDVCSFKTTTAKYLRNHMTVHSGEKPFQCDRCGDKFASNIILKMHIMRHTGEKPYECNICGYKCSQNGTLKRHLILHTGIKTFQCSKCDYRAAVKGTLAKHMAKHSTEKPFACNICSHKTKTAKLLKSHMISHTGEQQYKCNVCDKRFSRYKGMKKHMLIHTGEKPYACNLCDYRSTQKSNVKIHMKHRHKEFNAVTASKIEAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258340;
- 90% Identity
- iTF_01258340;
- 80% Identity
- iTF_01258340;