Pinq024254.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:47327221-47329442[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.4 2.4e+02 2.9 0.5 24 44 2 22 1 27 0.90 2 13 0.0007 0.42 11.7 0.1 21 48 27 53 23 58 0.87 3 13 2.2 1.3e+03 0.5 0.1 22 48 56 81 52 87 0.84 4 13 1.4 8.3e+02 1.2 0.1 23 43 85 105 79 115 0.85 5 13 8 4.7e+03 -1.3 0.1 21 43 111 133 106 138 0.78 6 13 0.0023 1.3 10.1 0.2 21 48 139 165 129 167 0.89 7 13 0.1 60 4.8 0.3 21 49 167 194 163 200 0.89 8 13 0.055 32 5.7 0.0 21 43 223 245 218 251 0.92 9 13 0.035 21 6.3 0.2 21 44 283 306 280 311 0.89 10 13 0.00045 0.27 12.4 0.2 21 47 311 337 308 342 0.84 11 13 0.023 13 6.9 1.1 22 48 340 365 336 369 0.88 12 13 0.0056 3.3 8.9 0.1 21 44 403 426 385 431 0.84 13 13 6.8 4.1e+03 -1.0 0.1 22 44 430 452 426 455 0.79
Sequence Information
- Coding Sequence
- ATGCCGTTCAGCTGCAACGTTTGCGAATACAAATGCCGCCAGATCGGACACTTGAGGCAGCACATGttgacgcacaccgacgagaaacccttcagctgtgacctttgcgattataaatcccGACAGATTTCGAACTTGAGGAgacacaagttaaagcacaccgaCGACAAACCGTTCAGCTGCGACCTTTGCGAATATAAATGCCGGGAAGTCGGGGCCTTCAAGAGGCACGAGCTGACGCACACCGACGTGAAGCCGTACGCTTGCGATCTATGCGATTACAAATTCCGACAGTTTGCGCACTTGAAACAGCACAAACTAACGCACTccggcgagaaaccgtataattgcgatctgtgcgattataaatgccgatgCATTGAATCCTTGAAGACGCATAAGCTAatgcacaccgacgagaagccgttcagttgtgatataTGCGAATATAAATGCCGATACATCGGTAACTTGAGGAGGCACAAGTTGAagcacaccaacgagaagccgttcagttgtgagcTTTGCGAGTATAAATGCCGAGAAATTGTAGCCTTGAAAAAGCACGAGTTAAGGCACACCGACGACAAGCCGTACAGTTGCGATcagtgcgattataaatgccggaaAGTTGCGCATTTGAAGCTGCACAAATTAatgcacaccgacgagaagccgttcagctgtgacctgtgcgattataaatgccgacaaatTTCAAACTTGAAGACTCACAAATCTTCGCCAATTTTTGAAACGTTGGACAAGCGAAAATACGAATGCCGCACGTGCGGTTGCAAATTTACAACGTCCGGCCACAGACGCAATCACACgttgatacacaccggcgagaagccgtttacCTGCGATTTATGCGACTACAGATGTCGCCAGGCCTCGCATTTAAAACTGCACGTGCTGAcgcacaccaacgagaagccgcGCATTTGTGGTTTCTGCGGTTACAAATGCCGCCAGGTCGGAAACTTGAGGCGACACATGCTGACGCATACCGTCGAGAAACCACATCGTTGTAATCTTTGCGACTACACGTGTCGGCACAGCTCGAGTCTAAAACGGCACAAGCTgaaacacaccggcgaaaaaCACGACAGACCTCCGAACGCACGCGAGTTCAGGTGCGAACTTTGCGAACATCTCAGCACGACCGCCGGCAATTTAAAGCTGCACATGCGCGTACAttccgacgagaaaccgttcaagtGTGACGTTTGTAAGTACGCGACTAGATGGTCGCAGCATTTGAAGAGGCACGCGCAGTCGCACGAGAAATGGCTGAGATGCAACATTTGCCAGTACACGTGTAAATTCGCGAAGGATTTAAAAGGGCATGTGGCGTCACATGCCGGCGAAAACCCCCTCTGA
- Protein Sequence
- MPFSCNVCEYKCRQIGHLRQHMLTHTDEKPFSCDLCDYKSRQISNLRRHKLKHTDDKPFSCDLCEYKCREVGAFKRHELTHTDVKPYACDLCDYKFRQFAHLKQHKLTHSGEKPYNCDLCDYKCRCIESLKTHKLMHTDEKPFSCDICEYKCRYIGNLRRHKLKHTNEKPFSCELCEYKCREIVALKKHELRHTDDKPYSCDQCDYKCRKVAHLKLHKLMHTDEKPFSCDLCDYKCRQISNLKTHKSSPIFETLDKRKYECRTCGCKFTTSGHRRNHTLIHTGEKPFTCDLCDYRCRQASHLKLHVLTHTNEKPRICGFCGYKCRQVGNLRRHMLTHTVEKPHRCNLCDYTCRHSSSLKRHKLKHTGEKHDRPPNAREFRCELCEHLSTTAGNLKLHMRVHSDEKPFKCDVCKYATRWSQHLKRHAQSHEKWLRCNICQYTCKFAKDLKGHVASHAGENPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258463;
- 90% Identity
- iTF_01258463;
- 80% Identity
- iTF_01258463;