Basic Information

Insect: Prosopocoilus inquinatus
Gene Symbol: -
Assembly: GCA_036172665.1
Location: CM069876.1:49208595-49211586[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.23 1.4e+02 3.7 0.0 21 43 10 32 8 41 0.87

2 21 0.37 2.2e+02 3.0 0.1 21 50 38 71 33 74 0.71

3 21 3.3 1.9e+03 -0.0 0.0 23 43 68 88 61 93 0.84

4 21 0.062 37 5.5 0.0 21 49 94 122 83 127 0.84

5 21 1.4 8.3e+02 1.2 0.1 21 43 122 144 118 149 0.87

6 21 0.039 23 6.2 0.0 21 48 150 176 145 181 0.86

7 21 0.42 2.5e+02 2.8 0.0 21 44 178 201 174 209 0.85

8 21 0.057 34 5.6 0.0 22 44 207 229 204 234 0.91

9 21 0.038 23 6.2 0.1 21 49 234 261 230 263 0.87

10 21 0.0072 4.3 8.5 0.1 21 43 262 284 257 289 0.90

11 21 0.0095 5.6 8.1 0.3 21 48 290 316 286 318 0.87

12 21 0.23 1.4e+02 3.7 0.3 21 47 318 344 314 350 0.88

13 21 5.1 3e+03 -0.6 0.0 26 46 355 375 345 383 0.81

14 21 0.081 48 5.1 0.0 21 48 378 404 375 410 0.86

15 21 5.9 3.5e+03 -0.8 0.0 21 52 406 437 403 438 0.75

16 21 0.59 3.5e+02 2.4 0.1 23 44 436 457 427 461 0.88

17 21 0.00045 0.26 12.4 0.2 21 50 462 490 458 493 0.90

18 21 0.15 88 4.3 0.2 18 43 487 512 485 521 0.87

19 21 0.92 5.4e+02 1.8 0.1 19 46 516 542 510 546 0.83

20 21 0.21 1.3e+02 3.8 0.2 17 48 542 572 538 574 0.85

21 21 0.4 2.4e+02 2.9 2.7 15 46 568 599 564 606 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.23	1.4e+02	3.7	0.0	21	43	10	32	8	41	0.87
2	21	0.37	2.2e+02	3.0	0.1	21	50	38	71	33	74	0.71
3	21	3.3	1.9e+03	-0.0	0.0	23	43	68	88	61	93	0.84
4	21	0.062	37	5.5	0.0	21	49	94	122	83	127	0.84
5	21	1.4	8.3e+02	1.2	0.1	21	43	122	144	118	149	0.87
6	21	0.039	23	6.2	0.0	21	48	150	176	145	181	0.86
7	21	0.42	2.5e+02	2.8	0.0	21	44	178	201	174	209	0.85
8	21	0.057	34	5.6	0.0	22	44	207	229	204	234	0.91
9	21	0.038	23	6.2	0.1	21	49	234	261	230	263	0.87
10	21	0.0072	4.3	8.5	0.1	21	43	262	284	257	289	0.90
11	21	0.0095	5.6	8.1	0.3	21	48	290	316	286	318	0.87
12	21	0.23	1.4e+02	3.7	0.3	21	47	318	344	314	350	0.88
13	21	5.1	3e+03	-0.6	0.0	26	46	355	375	345	383	0.81
14	21	0.081	48	5.1	0.0	21	48	378	404	375	410	0.86
15	21	5.9	3.5e+03	-0.8	0.0	21	52	406	437	403	438	0.75
16	21	0.59	3.5e+02	2.4	0.1	23	44	436	457	427	461	0.88
17	21	0.00045	0.26	12.4	0.2	21	50	462	490	458	493	0.90
18	21	0.15	88	4.3	0.2	18	43	487	512	485	521	0.87
19	21	0.92	5.4e+02	1.8	0.1	19	46	516	542	510	546	0.83
20	21	0.21	1.3e+02	3.8	0.2	17	48	542	572	538	574	0.85
21	21	0.4	2.4e+02	2.9	2.7	15	46	568	599	564	606	0.86

Sequence Information

Coding Sequence: ATGAAACTGCACGGGTTAATACACACCgccgagaagccgttcagttgcgacctttgcgattacaagtgccgacaGGCGGGAAGTTTGAAAGAGCACAAGCTAACACActccggcgagaagccgttcggctgcgatgtctgcgattataagtgcagATCTCAGGGAAAACTGAACAGACACAAAATGAAGCACAACGACTTGAGGCCGTTCGCCTGCGACATCTGCGATTTTAAATTCCGAGAGGCCGGGCAACTGAAAGAGCATAAGCAGACgcataccggcgagaagccgtttagttgtggtctttgcgattataagtgtcgaCTTGGTAAATACCTGAAGCGGCACATGTTAATACACaacggcgagaaaccgttcggttgtgatctctgcgattataaatgccaacGGGTGAGAAGCTTGAGAATTCACAAGTTGACGCACTCCGGCGAGAAGCCTTTCAGTTGCgatgtttgcgattataagtgccggcAATTGGTAAATATGAAGAATCACATGCTTAAGCAttccggcgagaaaccgttcagttgtgatctctgcgattacagATGTCGAAAATCCGGAGACATGAAGCAGCACAAGTTGATAcacgccgacgagaagccgttcggttgtgatctctgcgagtATAAGTGCCGGCAGGTCGGGACCCTGAGGAAACACATGGTGAAACAcgccgacgagaaaccgttcgcttGTGACATCTGCGAGTATAAGTGCCTGCAGGTGGGAAACTTGAAGCAGCACAGGCTGACGCACttcaacgagaagccgttcagctgcgatctttgcgattataagtgccgacaAGCTGGAAATATGAAGAGGCACAAGCTGACGCAttccgacgagaaaccgttcagttgtgatcgctgcgattacaaatgtcgaCAAGTCGAGAACTTGAGAAAACATCAACtgaaacacaccgacgagaagccgttcagatGTGGTATTTGCGATTACATATGCGAAAATTACAGGGATTTGGAAGTGCACGTGCGTCAACGTCAAACCAAAGCCGCGCACAAGAACGAATACCATTGCCGGATATGCGAAGCTAAATTTGCGACCCGCGCGTATTTGCGCAATCACATTTTggtacacaccggcgagaaaccgtacgGGTGCGAtttctgcgattataaatcgCGATACGCGGGGAACTTAAAAAGGCACGTGTtgaaacacaccgacgagaaaccgtacaGTTGTGACTTCTGCGATTTCAAGTGCCTACACCACGGAAGCTTCAGGCGGCACCAGCTGTATCACACCGGCgcgaagccgttcggttgtgacgtTTGCGGTTTCAGATGTCGGCAGCTCGGTAGTTTGAAGCGGCACGCGTtgaagcacaccgacgagaagccgttcagctgcgacGTCTGCGTTTTTACCTGTCGGGAGCTCACGAATTTAAAGCGGCACAAATTGAGGCACACCgccgagaagccgttcagctgcgacctttgcgatttcAAGTGTCGACGCCTCAGCAGCCTGAAACGGCACCAGCTGAGATACACCGGTGataagccgttcagttgcgacgCGTGCGATTTCAAGTGTCGGTTTCTCTTCAACCTGAAGCGGCACCGGTtgaaacacaccggcgagacGCCGTACGCttgcgatctctgcgattacaaggGCCGAGATGATACGAGCTTGAAGCGGCACAGGTTGAGGCACACCGGCGAGAGGCCGTTCGGCTGTGAGCGTTGCGGTTGTAGATTTCGTCGGCGCGCGCATTTGAAACGGCACATGtcgacgcacaccgacgagaaaccagTACGAATACCGATAGCTGGGAAGCTTGAAGAGGCACAGGTTTGA
Protein Sequence: MKLHGLIHTAEKPFSCDLCDYKCRQAGSLKEHKLTHSGEKPFGCDVCDYKCRSQGKLNRHKMKHNDLRPFACDICDFKFREAGQLKEHKQTHTGEKPFSCGLCDYKCRLGKYLKRHMLIHNGEKPFGCDLCDYKCQRVRSLRIHKLTHSGEKPFSCDVCDYKCRQLVNMKNHMLKHSGEKPFSCDLCDYRCRKSGDMKQHKLIHADEKPFGCDLCEYKCRQVGTLRKHMVKHADEKPFACDICEYKCLQVGNLKQHRLTHFNEKPFSCDLCDYKCRQAGNMKRHKLTHSDEKPFSCDRCDYKCRQVENLRKHQLKHTDEKPFRCGICDYICENYRDLEVHVRQRQTKAAHKNEYHCRICEAKFATRAYLRNHILVHTGEKPYGCDFCDYKSRYAGNLKRHVLKHTDEKPYSCDFCDFKCLHHGSFRRHQLYHTGAKPFGCDVCGFRCRQLGSLKRHALKHTDEKPFSCDVCVFTCRELTNLKRHKLRHTAEKPFSCDLCDFKCRRLSSLKRHQLRYTGDKPFSCDACDFKCRFLFNLKRHRLKHTGETPYACDLCDYKGRDDTSLKRHRLRHTGERPFGCERCGCRFRRRAHLKRHMSTHTDEKPVRIPIAGKLEEAQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258392;
90% Identity: iTF_01258392;
80% Identity: iTF_01258392;