Pinq024288.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:47621975-47636302[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.46 2.7e+02 2.7 0.2 14 44 49 78 41 83 0.76 2 19 0.03 18 6.5 0.2 21 46 83 108 80 116 0.84 3 19 0.001 0.61 11.2 0.0 21 43 139 161 132 166 0.89 4 19 0.031 18 6.5 0.1 21 44 167 190 164 198 0.86 5 19 0.047 28 5.9 0.3 20 45 194 219 187 226 0.85 6 19 1.5 9.1e+02 1.0 0.1 22 43 224 245 221 250 0.89 7 19 0.0018 1.1 10.4 0.0 21 44 251 274 248 282 0.86 8 19 0.19 1.1e+02 4.0 0.2 21 43 279 301 276 311 0.89 9 19 6.5 3.9e+03 -1.0 0.0 27 45 385 403 381 411 0.81 10 19 0.12 70 4.6 0.2 23 44 409 430 404 440 0.85 11 19 0.51 3e+02 2.6 0.0 21 47 435 461 430 467 0.85 12 19 0.36 2.1e+02 3.1 0.0 20 48 462 489 456 494 0.84 13 19 0.29 1.7e+02 3.4 0.3 16 43 486 513 485 522 0.84 14 19 0.00041 0.24 12.5 0.8 19 44 571 596 557 604 0.83 15 19 0.29 1.7e+02 3.4 0.0 22 47 602 627 599 634 0.83 16 19 0.56 3.3e+02 2.4 0.1 21 44 629 652 626 660 0.85 17 19 0.66 3.9e+02 2.2 0.1 21 43 657 679 645 684 0.81 18 19 0.0052 3.1 9.0 0.3 19 46 683 710 679 716 0.83 19 19 0.28 1.6e+02 3.4 0.1 16 45 708 737 706 744 0.88
Sequence Information
- Coding Sequence
- ATGATGGCCTCCATTTTGAATACATTCGAGTGCTGCGAAGATTATACTTACGGACAAACAAAAGAGCACAACAAGTTCCATCAACGCGAGCCGCCACTGAGATGCGTtgtctgcgattacaaatgccaaTGCCCCCACACTTTAAAACTGCACGTGCGAGAACATTCCAAACGCTTCGGctgtgacctctgcgattataaatgccgggaATCCAGGAGCCTGGCGAAGCACATgttaacacacaccggcgagaaaccgttcagctgtgacCTCTGCGACTACAAATGCCGGCAGATGAACCACCTGAAAAGGCACAAGTTAATacacaccaacgagaaaccgttcgcttGCGActtctgcgattacaaatgccgccATCTGAAAAGTCTGATAACGCACAAACTaaagcacaccggcgagaaaccgttcagctgcGACGTCTGCGATTACAAGTCCCGACAGATGGATAACTTAAGGAGgcacaaattaatacacaccggcgagaaaccgttcgcttgcgacctctgcgattataaatgccgagaaTCCAGGAGCTTGGAGAAGCACAAgctaatacacaccggcgagaaaccgttcagctgtgacttctgcgattataaatgtcgggaATCTAGGTGTTTGGCAAAGCACAtcttaatacacaccggcgagagacCGTTCAAATGCGACCACTGCGATTTTAATTGCCGATCATCCAGGACCTTGGAAACGCACAAactaatacacaccggcgagaaaccgttcagctgtgacGTGTGCGATTATAAAAGCCGACAGGCGACCAATTTGAAAAGACACaagttaatacacaccggcgagaaaccgttcagttgcgacCTCTGCCACTACAAGTGCCGGGAATACAGGAGCTTGGAGAAGCACAAGCTGGTGCACACCGGCGAGagaccgttcagttgtgacctctGCGAGTACAGAAGCGGAAAATTGGACCATTTGAAAAGACACCAATTCGAGTGCTTTAGACGCGACGCCGTCGGTCAGGTCCGTACTTGCGGAAAGACGAAAAGGCATCACCAAGAGCCGTCTCTGCGATGTGTCGTCTGCAATTACAAATGCCAATGTCCCGACACCTTAAGACTGCACGTGCTGGAACATTCCAAGCGCTTCCGTTGCGACctctgcgattttaaatgcaaaGATTCCAACAGCCTGAAAAGGCACaagttaatacacaccggcgggaaaccgttcagttgcgacGTCTGCGACTACAAATGCCGACAGATGAATCACCTGAAGAGACACagattaatacacaccggcgagaaaccgttcggctgCGACGtctgcgattttaaatgtcgCGACCTGCGAACCTTGAAGGCGCACAAAtcgatacacaccggcgagaaaccgttcggctgtgacctctgcgattacaaatcgCGACAGATGAATCACTTGAAAGTGCACAGGTTgaggcacaccggcgagaaaccgttcggttgtgacctcTGTGATTTTAAGTGCCGTGAACTGCGAAGCTTGAAAGCACACAGattcgAATGCCGCACCTGTGCCCTCCAGTTTGACACTTCCGGGCAGATGGAGGAGCACGAACAGCTCCGCCATCCCGACGCTTCAAATTTGCCCGCCAAACTCCTCAGTTGTGATCATTGCGACTTCAAAAGTCGGTATTCCAGTAGTATGAAACGGCACAGGTTGACGCACGCGCGAGAaaaaccgttcagttgcgacGTCTGCGATTGTAAATTCCGGCAACTCAGAAACATGCAAAGGCACaggttaatacacaccggcgacaAGCCCTTCAGCTGTGACGAATGCGATTACAAATGTTGGCAGTCTGCAAACTTGAAAAAGCACGTCTTGATACACagcgacgagaaaccgttcgcttGCGACCGCTGCGATTATAAAAGCCGACAGCCCGGCGAATTGAAAAGGCACAGcttgatacacaccggcgagaagccgtttagTTGCGGCTTGTGCGCTTACGAGTGCCGAGATTCCAAGAGCATGAAACTCCACCGCTTGAAGCACACCGGCGAGAGACCGTTCGCctgcgacctctgcgattataaatgccgtgAGGCTAGGAATTTGAAACAGCACAGGTCagtgcacaccggcgagaaaccgttcggttgtgacgtCTGCGATTTTAAGTGCCGAACGCGTTCGACGTTGAAAAACCACCTGTTGATGCACAGCGAGGAGGAACCGTTCGCTTGTGACGAATGCGAATGCAAGTTCAGAGTATTCGCTCACCTGAAACAGCATATGTTAGTACACACCGACGATAAGCTACTAATGAGTTGCAGTATTTGCGAATTCAAATGCCCCACCGTCGGGCAATTAAATCAACACATGATTAACGTCCATATACTTAAATGTCAAGTGCAACTATAA
- Protein Sequence
- MMASILNTFECCEDYTYGQTKEHNKFHQREPPLRCVVCDYKCQCPHTLKLHVREHSKRFGCDLCDYKCRESRSLAKHMLTHTGEKPFSCDLCDYKCRQMNHLKRHKLIHTNEKPFACDFCDYKCRHLKSLITHKLKHTGEKPFSCDVCDYKSRQMDNLRRHKLIHTGEKPFACDLCDYKCRESRSLEKHKLIHTGEKPFSCDFCDYKCRESRCLAKHILIHTGERPFKCDHCDFNCRSSRTLETHKLIHTGEKPFSCDVCDYKSRQATNLKRHKLIHTGEKPFSCDLCHYKCREYRSLEKHKLVHTGERPFSCDLCEYRSGKLDHLKRHQFECFRRDAVGQVRTCGKTKRHHQEPSLRCVVCNYKCQCPDTLRLHVLEHSKRFRCDLCDFKCKDSNSLKRHKLIHTGGKPFSCDVCDYKCRQMNHLKRHRLIHTGEKPFGCDVCDFKCRDLRTLKAHKSIHTGEKPFGCDLCDYKSRQMNHLKVHRLRHTGEKPFGCDLCDFKCRELRSLKAHRFECRTCALQFDTSGQMEEHEQLRHPDASNLPAKLLSCDHCDFKSRYSSSMKRHRLTHAREKPFSCDVCDCKFRQLRNMQRHRLIHTGDKPFSCDECDYKCWQSANLKKHVLIHSDEKPFACDRCDYKSRQPGELKRHSLIHTGEKPFSCGLCAYECRDSKSMKLHRLKHTGERPFACDLCDYKCREARNLKQHRSVHTGEKPFGCDVCDFKCRTRSTLKNHLLMHSEEEPFACDECECKFRVFAHLKQHMLVHTDDKLLMSCSICEFKCPTVGQLNQHMINVHILKCQVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258431;
- 90% Identity
- iTF_01258431;
- 80% Identity
- iTF_01258431;