Pinq024288.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:47621975-47636302[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0029 0.18 13.3 2.0 3 23 61 81 59 81 0.98
2 25 0.016 1 10.9 6.2 1 23 87 109 87 109 0.97
3 25 0.15 9.1 7.9 6.1 1 23 115 137 115 137 0.97
4 25 0.00043 0.027 15.9 1.0 1 23 143 165 143 165 0.97
5 25 0.0099 0.62 11.6 2.1 1 23 171 193 171 193 0.96
6 25 0.044 2.7 9.5 4.7 1 23 199 221 199 221 0.98
7 25 0.019 1.2 10.7 6.1 1 23 227 249 227 249 0.98
8 25 0.00018 0.011 17.0 1.0 1 23 255 277 255 277 0.97
9 25 0.27 17 7.0 6.0 1 23 283 305 283 305 0.97
10 25 0.11 7 8.3 1.1 1 20 311 330 311 332 0.96
11 25 0.0025 0.16 13.5 4.3 1 23 383 405 383 405 0.98
12 25 0.0038 0.24 12.9 5.7 1 23 411 433 411 433 0.97
13 25 0.06 3.7 9.1 2.0 3 23 441 461 439 461 0.97
14 25 0.074 4.6 8.8 2.6 3 23 469 489 467 489 0.97
15 25 3 1.9e+02 3.8 1.6 3 20 497 514 495 514 0.95
16 25 0.49 31 6.2 0.3 1 23 515 538 515 538 0.94
17 25 0.012 0.72 11.4 4.4 2 23 550 571 549 571 0.97
18 25 0.00051 0.032 15.6 3.6 1 23 577 599 577 599 0.97
19 25 0.0039 0.24 12.9 1.3 1 23 605 627 605 627 0.97
20 25 0.0023 0.14 13.6 0.3 1 23 633 655 633 655 0.95
21 25 0.49 31 6.2 2.7 1 23 661 683 661 683 0.98
22 25 0.004 0.25 12.8 2.1 1 23 689 711 689 711 0.97
23 25 0.002 0.13 13.7 3.1 3 23 719 739 717 739 0.98
24 25 0.0016 0.098 14.1 3.0 1 23 745 767 745 767 0.97
25 25 0.025 1.6 10.3 0.6 2 23 775 797 774 797 0.94

Sequence Information

Coding Sequence
ATGATGGCCTCCATTTTGAATACATTCGAGTGCTGCGAAGATTATACTTACGGACAAACAAAAGAGCACAACAAGTTCCATCAACGCGAGCCGCCACTGAGATGCGTtgtctgcgattacaaatgccaaTGCCCCCACACTTTAAAACTGCACGTGCGAGAACATTCCAAACGCTTCGGctgtgacctctgcgattataaatgccgggaATCCAGGAGCCTGGCGAAGCACATgttaacacacaccggcgagaaaccgttcagctgtgacCTCTGCGACTACAAATGCCGGCAGATGAACCACCTGAAAAGGCACAAGTTAATacacaccaacgagaaaccgttcgcttGCGActtctgcgattacaaatgccgccATCTGAAAAGTCTGATAACGCACAAACTaaagcacaccggcgagaaaccgttcagctgcGACGTCTGCGATTACAAGTCCCGACAGATGGATAACTTAAGGAGgcacaaattaatacacaccggcgagaaaccgttcgcttgcgacctctgcgattataaatgccgagaaTCCAGGAGCTTGGAGAAGCACAAgctaatacacaccggcgagaaaccgttcagctgtgacttctgcgattataaatgtcgggaATCTAGGTGTTTGGCAAAGCACAtcttaatacacaccggcgagagacCGTTCAAATGCGACCACTGCGATTTTAATTGCCGATCATCCAGGACCTTGGAAACGCACAAactaatacacaccggcgagaaaccgttcagctgtgacGTGTGCGATTATAAAAGCCGACAGGCGACCAATTTGAAAAGACACaagttaatacacaccggcgagaaaccgttcagttgcgacCTCTGCCACTACAAGTGCCGGGAATACAGGAGCTTGGAGAAGCACAAGCTGGTGCACACCGGCGAGagaccgttcagttgtgacctctGCGAGTACAGAAGCGGAAAATTGGACCATTTGAAAAGACACCAATTCGAGTGCTTTAGACGCGACGCCGTCGGTCAGGTCCGTACTTGCGGAAAGACGAAAAGGCATCACCAAGAGCCGTCTCTGCGATGTGTCGTCTGCAATTACAAATGCCAATGTCCCGACACCTTAAGACTGCACGTGCTGGAACATTCCAAGCGCTTCCGTTGCGACctctgcgattttaaatgcaaaGATTCCAACAGCCTGAAAAGGCACaagttaatacacaccggcgggaaaccgttcagttgcgacGTCTGCGACTACAAATGCCGACAGATGAATCACCTGAAGAGACACagattaatacacaccggcgagaaaccgttcggctgCGACGtctgcgattttaaatgtcgCGACCTGCGAACCTTGAAGGCGCACAAAtcgatacacaccggcgagaaaccgttcggctgtgacctctgcgattacaaatcgCGACAGATGAATCACTTGAAAGTGCACAGGTTgaggcacaccggcgagaaaccgttcggttgtgacctcTGTGATTTTAAGTGCCGTGAACTGCGAAGCTTGAAAGCACACAGattcgAATGCCGCACCTGTGCCCTCCAGTTTGACACTTCCGGGCAGATGGAGGAGCACGAACAGCTCCGCCATCCCGACGCTTCAAATTTGCCCGCCAAACTCCTCAGTTGTGATCATTGCGACTTCAAAAGTCGGTATTCCAGTAGTATGAAACGGCACAGGTTGACGCACGCGCGAGAaaaaccgttcagttgcgacGTCTGCGATTGTAAATTCCGGCAACTCAGAAACATGCAAAGGCACaggttaatacacaccggcgacaAGCCCTTCAGCTGTGACGAATGCGATTACAAATGTTGGCAGTCTGCAAACTTGAAAAAGCACGTCTTGATACACagcgacgagaaaccgttcgcttGCGACCGCTGCGATTATAAAAGCCGACAGCCCGGCGAATTGAAAAGGCACAGcttgatacacaccggcgagaagccgtttagTTGCGGCTTGTGCGCTTACGAGTGCCGAGATTCCAAGAGCATGAAACTCCACCGCTTGAAGCACACCGGCGAGAGACCGTTCGCctgcgacctctgcgattataaatgccgtgAGGCTAGGAATTTGAAACAGCACAGGTCagtgcacaccggcgagaaaccgttcggttgtgacgtCTGCGATTTTAAGTGCCGAACGCGTTCGACGTTGAAAAACCACCTGTTGATGCACAGCGAGGAGGAACCGTTCGCTTGTGACGAATGCGAATGCAAGTTCAGAGTATTCGCTCACCTGAAACAGCATATGTTAGTACACACCGACGATAAGCTACTAATGAGTTGCAGTATTTGCGAATTCAAATGCCCCACCGTCGGGCAATTAAATCAACACATGATTAACGTCCATATACTTAAATGTCAAGTGCAACTATAA
Protein Sequence
MMASILNTFECCEDYTYGQTKEHNKFHQREPPLRCVVCDYKCQCPHTLKLHVREHSKRFGCDLCDYKCRESRSLAKHMLTHTGEKPFSCDLCDYKCRQMNHLKRHKLIHTNEKPFACDFCDYKCRHLKSLITHKLKHTGEKPFSCDVCDYKSRQMDNLRRHKLIHTGEKPFACDLCDYKCRESRSLEKHKLIHTGEKPFSCDFCDYKCRESRCLAKHILIHTGERPFKCDHCDFNCRSSRTLETHKLIHTGEKPFSCDVCDYKSRQATNLKRHKLIHTGEKPFSCDLCHYKCREYRSLEKHKLVHTGERPFSCDLCEYRSGKLDHLKRHQFECFRRDAVGQVRTCGKTKRHHQEPSLRCVVCNYKCQCPDTLRLHVLEHSKRFRCDLCDFKCKDSNSLKRHKLIHTGGKPFSCDVCDYKCRQMNHLKRHRLIHTGEKPFGCDVCDFKCRDLRTLKAHKSIHTGEKPFGCDLCDYKSRQMNHLKVHRLRHTGEKPFGCDLCDFKCRELRSLKAHRFECRTCALQFDTSGQMEEHEQLRHPDASNLPAKLLSCDHCDFKSRYSSSMKRHRLTHAREKPFSCDVCDCKFRQLRNMQRHRLIHTGDKPFSCDECDYKCWQSANLKKHVLIHSDEKPFACDRCDYKSRQPGELKRHSLIHTGEKPFSCGLCAYECRDSKSMKLHRLKHTGERPFACDLCDYKCREARNLKQHRSVHTGEKPFGCDVCDFKCRTRSTLKNHLLMHSEEEPFACDECECKFRVFAHLKQHMLVHTDDKLLMSCSICEFKCPTVGQLNQHMINVHILKCQVQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01258843;
90% Identity
iTF_01258843;
80% Identity
iTF_01258843;