Pinq024455.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:49679948-49689380[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 8.3 4.9e+03 -1.3 0.0 22 47 9 34 7 39 0.82
2 39 0.68 4e+02 2.2 0.0 21 48 36 62 33 67 0.86
3 39 0.62 3.7e+02 2.3 0.0 19 48 62 90 56 96 0.82
4 39 4.2 2.5e+03 -0.4 0.0 21 44 92 115 87 120 0.87
5 39 0.0023 1.4 10.1 0.1 23 45 122 144 117 151 0.86
6 39 0.012 6.9 7.8 0.0 15 44 166 195 160 200 0.86
7 39 0.054 32 5.7 0.1 17 47 224 254 214 260 0.84
8 39 0.79 4.7e+02 2.0 0.0 22 47 257 282 254 289 0.85
9 39 2.3 1.4e+03 0.5 0.1 21 44 284 307 267 311 0.90
10 39 0.22 1.3e+02 3.7 0.7 21 44 312 335 304 345 0.84
11 39 5.9 3.5e+03 -0.8 0.0 21 44 340 363 337 371 0.85
12 39 0.29 1.7e+02 3.4 0.3 21 49 368 395 365 401 0.86
13 39 4.2 2.5e+03 -0.4 0.0 22 48 397 422 391 428 0.81
14 39 0.056 33 5.7 0.2 21 46 424 449 416 455 0.85
15 39 1 6e+02 1.6 0.1 22 43 453 474 450 479 0.90
16 39 0.22 1.3e+02 3.7 0.5 21 49 480 507 475 512 0.90
17 39 0.018 11 7.2 0.6 15 49 516 549 509 555 0.84
18 39 0.085 50 5.1 0.0 21 44 578 601 575 610 0.86
19 39 0.97 5.8e+02 1.7 0.1 21 43 606 628 603 637 0.86
20 39 0.19 1.2e+02 3.9 1.3 14 49 627 661 618 667 0.85
21 39 3.9 2.3e+03 -0.3 0.1 14 36 655 677 652 687 0.75
22 39 4.5 2.6e+03 -0.4 0.0 21 47 690 716 682 721 0.84
23 39 0.16 94 4.2 0.4 21 48 718 744 715 749 0.89
24 39 1.5 8.8e+02 1.1 0.3 18 38 743 763 740 765 0.82
25 39 1.4 8.2e+02 1.2 0.4 26 44 776 794 767 802 0.84
26 39 1.7 1e+03 0.9 0.0 21 43 799 821 795 827 0.85
27 39 0.094 56 4.9 0.0 21 44 827 850 822 858 0.87
28 39 0.1 60 4.8 0.1 21 48 855 881 850 883 0.90
29 39 0.4 2.4e+02 2.9 0.1 21 43 883 905 881 911 0.89
30 39 0.3 1.8e+02 3.3 0.0 21 43 911 933 909 942 0.88
31 39 1.7 1e+03 0.9 0.1 21 44 939 962 934 971 0.86
32 39 1.6 9.6e+02 1.0 0.0 21 44 995 1018 990 1022 0.89
33 39 0.015 8.9 7.5 0.3 21 43 1023 1045 1020 1054 0.88
34 39 0.38 2.3e+02 3.0 0.1 21 48 1051 1077 1048 1079 0.89
35 39 0.043 26 6.0 0.2 18 43 1076 1101 1074 1111 0.87
36 39 3.5 2.1e+03 -0.1 0.0 21 48 1135 1161 1133 1163 0.88
37 39 0.012 7 7.8 0.0 21 48 1163 1189 1159 1195 0.87
38 39 3.7 2.2e+03 -0.2 0.0 21 43 1191 1213 1187 1222 0.83
39 39 0.058 34 5.6 0.3 21 43 1219 1241 1211 1246 0.87

Sequence Information

Coding Sequence
ATGCACCtgctaacgcacaccgacgagaagccgttcttCTGCGGTCTTTGCGACAATAAATTCCGACGGATCGACCAGCTGAAAGGACACATGTTAATACACACgagcgagaagccgttcggctgCGATGTCTGCGGTCACAAAAGCCGGCGGCTCAATGATTTGAAGaagcacaagttaaagcacaccggcgagaagccgttcagttgcgatctgtgcgattataaatgccgatgGGTCACAAACCTGAAAACGCACAAGCTcaagcacaccgacgagaagccgttcttttgtggtctttgcgattatagatgCCGACAGGCTGGAGTTTTGAACGCGCACATGATAATACACACAGACAAAAATCCGTTCAGCTGCAGTATTTGTGATTATAAGTGCCGGAAATCCGGAAACTTGAAAAGACACATGATAACACACGCCAGCCCGAAACCGTTCAATTCAAATGCCAGAGCTTTGAAAGGatACCTAGAGGTCCCGGGGACCGAAACTGAAAACGAAAACCAAGTCGAATGTCGAATATGTAACGCCACATTTAAAAACCATTCAAATTTACGCGCGCACATCTTCACGCACACAGGCGAGAAGACGTTCAGTTGTaatctctgcgattacaaatgcggACACGTCGGACACCTAAACCAGCACAAGCTACgccacaccgacgagaaaccgttcagctgcgccctttgcgattacaaatgccgggAACCTAATAAACTCAAGAGGCACGTCTTAAtccacaccgacgagaagccgttcggctgCGACCTCTGCGAATATAGATCTCGGCAAGCCTCGGGATTGAAAACGCAcatgttaatacacaccggcgagaagccgttcggctgTGATCTTTGCAGTTATAAATGTCGCAGTATCGGAGACCTGAAAAGGCACAAGCAAAcgcacaccgatgagaagccgttcagctgtaattcctgcgattataaatgccgaaagGCCGCGACCTTAAGACGGCACAActtaatacacaccgacgagaagccgttccgttgtgatctttgcgattataaaggcCGACAGGTTTCAGTTTTGAAAGCCCACATGTTAACGCAcacgggcgagaagccgttcagctgtgatAGGTGCAGTTATAAATGCCGGAAGGCCAATGACTTGAAAAGGCACAGGTTGAAGCACACCGACAAGAAGCCGCTCGGctgtgacctctgcgattataagtgtcgGGAAGTCAAACATTTGAAAcagcacaagttaaagcacgcCGTCGAGAAACCGTTTgcttgtgatctttgcgacTACAAATGTCGATACGATAGATCCTTGAGGACGCACATGTTGATACACGCGGACGAGAAGCCGTTGAGTTGTAATctctgcgattttaaatgccggGTCGCCTCGAGCCTGAAACGgcacaagttaacgcacacagacgagaagccgttctgctgcgatctttgcgattataaatgccgggaAGCTATTTCCTTGAAGAGGCACGGGTTGAGACACATTAACGAGAAGCGGTGTCAACGGATTCCGGGAGCCAAAACTTCGAACGAGAAAACATTCGAATGTCGAATATGCAACTCTAAACTTAAAAGGCGTTCAAATTTACGCGCACATGTTCTCAGGCATGTTGGTGGgaagccgttcagctgtgatctttgcgattataaatgctgGGCGTCCAAAATATTACAGAGGCACGTgttaacacacaccggcgagaagcccttCAGTTGCGATATTTGCGAATACAAAAGTCGGCAAGCTTCGACCCTAAAAACGCACATgttaacgcacaccggcgagaaaccctTCGGTTGCGATctgtgcgattacaaatgccggaCGTCTAGCCGTTTGAAAAAGCACAGGTTAACGCACACCAAGGAGAAGCCATTCgcctgtgatctttgcgattataaatgcagaAAAGCCAATGCTTTACAAAAGCACAAATTAAGGCACACAGTTGAGAAACCCTACAGCTGCGATGTTTGCGGTTATAAATGCCGTGTCGCCGCTCGCTTAGAAATGCATAAGCTAACGCACACCGATGAGAGGCCGTTCTTTTGTGGTCTTTGCGATGATAAATTCCGAGGAATTAAACAACTGAAAACTCACATGCTAATACACACAAACGAGAAGCCGTTTGGTTGTGatctttgcagttataagtGCCGACGATCCACGGAGTTGCAGCAGCACAAGTTAAGACACgccgatgagaagccgttcaccTGTGATCTGTGTGATTACAAATGCCGCAAGGCCCGaatttcGGGAGCCAAAACCGCAAACGCAAAAACATTCGAATGTCGGATATGTAACGCTAAACTTAAAAGGCGATCAAGTTTACGCGCGCACATTCTCACGCATACCGGTGAGAAGCcactcagttgtgatctttgcgattacaaatgccgacaaGTCGGAAGCTTGAAGCTCCACCAGCTGAAGCACACCGACgaaaagccgttcagttgtgacctttgcggtTTTAAATGCCGGGCATCTAAAATACTGAAGAGGCACAAGCTGACGCACacggacgagaagccgttcggctgcgcgctttgcgattataaatgccgggcGTCTAAGATATTGCAGAGGCACGagttaacgcacaccggcgagaagccgttcagttgcgatgtTTGCGAATACAAATGTCGGCAAGCGTCGACCTTAAAAACGCACAAGTTAATACATacgggcgagaagccgttcggttgtgatctctgcggTTATAAATGCCGGGCATCTGGGGATTTGAAGAGGCACAAGGTAACGCACACCGaggagaaaccgttcagttgtgaccgttgcgattacaaatgtcgaAAAGCCAATGATTTAAAAAAGCATGTGCTAACGCACACCGAGGAGAAACCCTACAGTTGTGATgcttgcgattataagtgccggcTCGTCGCCCGCTTAGAAATGCACAAGCTAACACACACCGATGAGAGGCCGTTCTTTTGTGGTctttgcaattataaattccgaGGGATCAGACAACTGAAAACTCACATGTTAATACACACGAGCGAGAAACCGTTTCGTTGCGATCTTTGCAGTTTCAAGTGCCGACAATCGACGCAGTTGAAGCAGCAcaagttaacacacaccgatgagaagccgttcagttgtgatatctgcgattacaaatgccggaAGGCCGGATACTTGAAAGGGCACATGTTAAGACACACAAGCGAGAAGCCACTCAgttgcgacctttgcgattataagtgccgacaATTCACACAGCTGAAACAGCACAAGTTAAATCACACCGATGAAAAGCCGTTTCGCTGTGAtttctgcgattataaatgccggatGGTTGGCCTCTTGAAAAGTCACATGTTAATACATTCGGgggagaagccgttcggttgtggcTTTTGCGACTTTAAATGTCGCCGGGCGGGAGGCTTGAGAGAGCACGAgctaacacacaccgacgagaagccgttcagttgtgatctgtgcgattataaatgccgattATCCAAAGATTTGAGAAAGCACATGTTAAAGCATAAcgatgagaagccgttcggttgtgacctctgcgattatagaGGCCGACGGGTCGCGAATCTGAAAGCGCACAGGTTATCACACACCgttgagaagccgttcagttgtgaactttgcgattataaatgccgaaacGCTTCAGATTTGAGACGGCACAAGTTAACACACGCCGATTAG
Protein Sequence
MHLLTHTDEKPFFCGLCDNKFRRIDQLKGHMLIHTSEKPFGCDVCGHKSRRLNDLKKHKLKHTGEKPFSCDLCDYKCRWVTNLKTHKLKHTDEKPFFCGLCDYRCRQAGVLNAHMIIHTDKNPFSCSICDYKCRKSGNLKRHMITHASPKPFNSNARALKGYLEVPGTETENENQVECRICNATFKNHSNLRAHIFTHTGEKTFSCNLCDYKCGHVGHLNQHKLRHTDEKPFSCALCDYKCREPNKLKRHVLIHTDEKPFGCDLCEYRSRQASGLKTHMLIHTGEKPFGCDLCSYKCRSIGDLKRHKQTHTDEKPFSCNSCDYKCRKAATLRRHNLIHTDEKPFRCDLCDYKGRQVSVLKAHMLTHTGEKPFSCDRCSYKCRKANDLKRHRLKHTDKKPLGCDLCDYKCREVKHLKQHKLKHAVEKPFACDLCDYKCRYDRSLRTHMLIHADEKPLSCNLCDFKCRVASSLKRHKLTHTDEKPFCCDLCDYKCREAISLKRHGLRHINEKRCQRIPGAKTSNEKTFECRICNSKLKRRSNLRAHVLRHVGGKPFSCDLCDYKCWASKILQRHVLTHTGEKPFSCDICEYKSRQASTLKTHMLTHTGEKPFGCDLCDYKCRTSSRLKKHRLTHTKEKPFACDLCDYKCRKANALQKHKLRHTVEKPYSCDVCGYKCRVAARLEMHKLTHTDERPFFCGLCDDKFRGIKQLKTHMLIHTNEKPFGCDLCSYKCRRSTELQQHKLRHADEKPFTCDLCDYKCRKARISGAKTANAKTFECRICNAKLKRRSSLRAHILTHTGEKPLSCDLCDYKCRQVGSLKLHQLKHTDEKPFSCDLCGFKCRASKILKRHKLTHTDEKPFGCALCDYKCRASKILQRHELTHTGEKPFSCDVCEYKCRQASTLKTHKLIHTGEKPFGCDLCGYKCRASGDLKRHKVTHTEEKPFSCDRCDYKCRKANDLKKHVLTHTEEKPYSCDACDYKCRLVARLEMHKLTHTDERPFFCGLCNYKFRGIRQLKTHMLIHTSEKPFRCDLCSFKCRQSTQLKQHKLTHTDEKPFSCDICDYKCRKAGYLKGHMLRHTSEKPLSCDLCDYKCRQFTQLKQHKLNHTDEKPFRCDFCDYKCRMVGLLKSHMLIHSGEKPFGCGFCDFKCRRAGGLREHELTHTDEKPFSCDLCDYKCRLSKDLRKHMLKHNDEKPFGCDLCDYRGRRVANLKAHRLSHTVEKPFSCELCDYKCRNASDLRRHKLTHAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01258301;
90% Identity
iTF_01258301;
80% Identity
iTF_01258301;