Paka007335.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- Aef1
- Assembly
- GCA_018397935.1
- Location
- CM031468.1:25087592-25088318[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00056 2.7 7.9 0.1 21 51 6 36 3 37 0.87 2 4 6.6e-05 0.32 10.9 0.1 21 51 34 64 31 65 0.87 3 4 0.0029 14 5.6 0.0 21 49 62 90 58 93 0.86 4 4 8.5e-05 0.41 10.5 0.1 21 46 90 115 86 120 0.91
Sequence Information
- Coding Sequence
- ATGAAATTGCCCAATACTGAAAAGCCATTTCAGTGTAACGTTTGTGAGAAACAGTTCCGTCAATTAAGTACGCTAGCAAACCATATGAAAATTCACACGGGAGAAAAACCATTCAAATGCCATGTGTGCAGTCGAGAATTCAGGCAATCGAGTACCTTAACGAATCACATCAAAATCCATACGGGAGAGAAACCATACAATTGCTCGTTTTGTGGAAAGCAGTTTCGTCAATTAAGTACTTTAAGTAATCATGTCAAAATTCATACAGGTGAGAAGCCATTTGAGTGCGTGGTGTGTAAAAAACAATTTCGACAATCGAGCACGCTCAATAATCATATTAAAATCCATACCGGTGATAAGTTTGTTATCTGA
- Protein Sequence
- MKLPNTEKPFQCNVCEKQFRQLSTLANHMKIHTGEKPFKCHVCSREFRQSSTLTNHIKIHTGEKPYNCSFCGKQFRQLSTLSNHVKIHTGEKPFECVVCKKQFRQSSTLNNHIKIHTGDKFVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01257389;
- 90% Identity
- iTF_00347202;
- 80% Identity
- iTF_01257389;