Pcoq006270.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- -
- Assembly
- GCA_001932985.1
- Location
- MNCL01000141.1:126297-128123[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.02 1.3e+02 3.3 0.1 17 43 200 225 196 231 0.82 2 9 0.0013 8.6 7.1 0.6 21 50 231 259 225 261 0.81 3 9 0.00094 6.3 7.6 0.8 24 47 261 284 253 290 0.80 4 9 0.34 2.3e+03 -0.6 0.0 21 44 286 309 281 313 0.84 5 9 0.0019 12 6.6 0.2 21 45 314 338 309 345 0.88 6 9 0.00053 3.5 8.4 0.1 21 47 370 396 355 402 0.82 7 9 0.08 5.3e+02 1.4 0.1 21 43 398 420 394 425 0.85 8 9 8e-06 0.053 14.2 0.1 21 52 426 457 408 458 0.85 9 9 9.4e-07 0.0062 17.2 0.3 22 48 455 481 452 484 0.90
Sequence Information
- Coding Sequence
- ATGGCTGGGAAGATGCTTGAAATGAAAAGCATCCTTCTTGCGGATTTCACGGCGGACAGCTGCAGTAGCTTCTCAGTCGGCGAGGACAGCCACGATTTCTTACTGACTGAAGATATGATCAAGAAGGAGCCGGAGTTCATAATCGACAACGACGAAACAGAGGGTGAGAAAATTCGCAGCTTCTTAAAGAAATCAGTAATAAACGACAACGACAGGAAGAAATTGGAGTGGCACAATTGCATTATATGTGACGAGCGTTTTCTCAATGTCGAAGATCTCTCGATGCATGTTCAAGGACACATCAAGAAGGAAAGGGTCGACGACGCGGAAAAGGCGCTCAACCACCGACAAGCACCGAAGACCCAACACACCGGATTCACGAAGGAGGAATGCTTCAGGGattatgtgaaaattaaagtcaatttAGAAGGCGACCCGACCTATATATGCAAACTGTGCAACGGTAAACATTTTACTAAGTTAATCGCCATCCAAAACCACATGCGGATTCACCAGAGTCCCATATACAAGGAACGAAGTTGTCACATTTGCAAGAGGACTTTTTTGCGACGAGATACCTTGATGGTTCACCTCAGGACACATAGCCAGGAACGTCCTTACAAATGTGATATGTGCACAGCGACCTTCGCTCACTCCAGCTCCTTGGTGTCCCACAAGCGGATCCATTCTGGGGAACGGCCTTATACCTGCGAAGTCTGTCATCAGTCCTTCCGTGAATCTGGGCAAATGTCGGCACATCGTAGAACGCATTTCAATAAGACCTTGAAATGCCCCCAGTGCAATCAGTATTATGCATCTTCAAAGAACCTAAGGACCCATTTACGGACGCACACGGGGGAAAAGCCCTATGACTGCATTCAATGCGAAAAGAGTTTTCGGACCTCTACAGCACTCACCCTACACGTCCGAGTGCATACTGGAGAAAGGCCCTATAAGTGCCCTCACTGTCCTTATGCGACGAAGCAATCTGGATCGCTGAAGTCTCACATGAGAACCCACACAGGAGAGCGACCTTTTAAATGTGATCTTTGTGAACGTTCTTACACCGAGAAGAAGCGCCTTATTACCCACTATAGGACGCACACTGGAGAGCGACCCTACAAGTGTGACTACTGCGACTCCGCTTTCATTCGAAGCGATAATCTTCGTAGTCATCTGCGAACTCATACAGGTGAGAAGCCATTTCAATGCCCCGACTGCCCGAAGGCGTTTGCCCAGAAAACTACTCTAAAGGCCCACGAAAAGGTTCACTCCGGGGAAAAGCCGTATGCTTGCCCTTTCTGCGATCAATCCTTCCGTCAGTCTGGCACGTTGCAGACGCATATGCGGATCCACGACAATCAGAAACCATTCCAGTGCCAGCTGTGCGACAAGAGCTTTCGTCAGTCGAGCAACCTTCGCAGGCATGTTGCAATTGACCACAATGTGGTGATGGAAGGACAACTCTTCTAG
- Protein Sequence
- MAGKMLEMKSILLADFTADSCSSFSVGEDSHDFLLTEDMIKKEPEFIIDNDETEGEKIRSFLKKSVINDNDRKKLEWHNCIICDERFLNVEDLSMHVQGHIKKERVDDAEKALNHRQAPKTQHTGFTKEECFRDYVKIKVNLEGDPTYICKLCNGKHFTKLIAIQNHMRIHQSPIYKERSCHICKRTFLRRDTLMVHLRTHSQERPYKCDMCTATFAHSSSLVSHKRIHSGERPYTCEVCHQSFRESGQMSAHRRTHFNKTLKCPQCNQYYASSKNLRTHLRTHTGEKPYDCIQCEKSFRTSTALTLHVRVHTGERPYKCPHCPYATKQSGSLKSHMRTHTGERPFKCDLCERSYTEKKRLITHYRTHTGERPYKCDYCDSAFIRSDNLRSHLRTHTGEKPFQCPDCPKAFAQKTTLKAHEKVHSGEKPYACPFCDQSFRQSGTLQTHMRIHDNQKPFQCQLCDKSFRQSSNLRRHVAIDHNVVMEGQLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00425042;
- 90% Identity
- iTF_01256543;
- 80% Identity
- iTF_01256543;